Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC018659.1-201ENST00000551083 169 ntBASIC0.71□□□□□ -2.3
MRE11P49959 SNORA70.25-201ENST00000612741 95 ntBASIC0.71□□□□□ -2.3
MRE11P49959 RNU6-411P-201ENST00000384451 107 ntBASIC0.7□□□□□ -2.3
MRE11P49959 Y_RNA.545-201ENST00000384652 105 ntBASIC0.7□□□□□ -2.3
MRE11P49959 SNORD110-201ENST00000408189 75 ntBASIC0.7□□□□□ -2.3
MRE11P49959 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.7□□□□□ -2.3
MRE11P49959 RNU6-523P-201ENST00000516304 54 ntBASIC0.7□□□□□ -2.3
MRE11P49959 MIR3675-201ENST00000583661 73 ntBASIC0.7□□□□□ -2.3
MRE11P49959 RNU1-29P-201ENST00000606574 126 ntBASIC0.7□□□□□ -2.3
MRE11P49959 RNU6-1039P-201ENST00000383931 107 ntBASIC0.69□□□□□ -2.3
MRE11P49959 Y_RNA.565-201ENST00000384719 101 ntBASIC0.69□□□□□ -2.3
MRE11P49959 MIR518A1-201ENST00000385068 85 ntBASIC0.69□□□□□ -2.3
MRE11P49959 SNORD71-201ENST00000411292 86 ntBASIC0.69□□□□□ -2.3
MRE11P49959 AL691482.2-201ENST00000457453 84 ntBASIC0.69□□□□□ -2.3
MRE11P49959 AC023932.2-201ENST00000603176 175 ntBASIC0.69□□□□□ -2.3
MRE11P49959 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
MRE11P49959 AC243829.6-201ENST00000612652 106 ntBASIC0.68□□□□□ -2.3
MRE11P49959 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
MRE11P49959 RNA5SP266-201ENST00000410273 108 ntBASIC0.67□□□□□ -2.3
MRE11P49959 RNU4-54P-201ENST00000516428 129 ntBASIC0.67□□□□□ -2.3
MRE11P49959 RNA5SP67-201ENST00000516422 131 ntBASIC0.66□□□□□ -2.3
MRE11P49959 RNU6-687P-201ENST00000516443 89 ntBASIC0.66□□□□□ -2.3
MRE11P49959 RNU6-1015P-201ENST00000517121 99 ntBASIC0.66□□□□□ -2.3
MRE11P49959 MIR5706-201ENST00000579841 80 ntBASIC0.66□□□□□ -2.3
MRE11P49959 MIR6509-201ENST00000614603 85 ntBASIC0.66□□□□□ -2.3
MRE11P49959 uc_338.17-201ENST00000619633 179 ntBASIC0.66□□□□□ -2.3
MRE11P49959 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
MRE11P49959 RNA5SP499-201ENST00000363982 119 ntBASIC0.65□□□□□ -2.31
MRE11P49959 RNA5SP368-201ENST00000364298 116 ntBASIC0.65□□□□□ -2.31
MRE11P49959 RNU6-587P-201ENST00000391282 106 ntBASIC0.65□□□□□ -2.31
MRE11P49959 AL157398.1-201ENST00000452981 186 ntBASIC0.65□□□□□ -2.31
MRE11P49959 RNU6-758P-201ENST00000516292 89 ntBASIC0.65□□□□□ -2.31
MRE11P49959 MIR4473-201ENST00000583731 91 ntBASIC0.65□□□□□ -2.31
MRE11P49959 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
MRE11P49959 RNA5SP98-201ENST00000363158 137 ntBASIC0.64□□□□□ -2.31
MRE11P49959 SNORD114-4-201ENST00000363962 75 ntBASIC0.64□□□□□ -2.31
MRE11P49959 Y_RNA.407-201ENST00000383986 113 ntBASIC0.64□□□□□ -2.31
MRE11P49959 RNU6-1241P-201ENST00000384536 107 ntBASIC0.64□□□□□ -2.31
MRE11P49959 MIR203A-201ENST00000384836 110 ntBASIC0.64□□□□□ -2.31
MRE11P49959 HMGN2P22-201ENST00000427588 175 ntBASIC0.64□□□□□ -2.31
MRE11P49959 IGLVI-20-201ENST00000519296 130 ntBASIC0.64□□□□□ -2.31
MRE11P49959 MIR548AE1-201ENST00000583292 70 ntBASIC0.64□□□□□ -2.31
MRE11P49959 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.64□□□□□ -2.31
MRE11P49959 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
MRE11P49959 Y_RNA.457-201ENST00000384237 111 ntBASIC0.63□□□□□ -2.31
MRE11P49959 MIR1468-201ENST00000410600 86 ntBASIC0.63□□□□□ -2.31
MRE11P49959 SNORD45.1-201ENST00000363181 77 ntBASIC0.62□□□□□ -2.31
MRE11P49959 RNU6-990P-201ENST00000364385 104 ntBASIC0.62□□□□□ -2.31
MRE11P49959 Y_RNA.423-201ENST00000384057 113 ntBASIC0.62□□□□□ -2.31
MRE11P49959 RNU6-260P-201ENST00000384092 107 ntBASIC0.62□□□□□ -2.31
MRE11P49959 MIR3657-201ENST00000584818 117 ntBASIC0.62□□□□□ -2.31
MRE11P49959 MIR6755-201ENST00000619993 66 ntBASIC0.62□□□□□ -2.31
MRE11P49959 MIR154-201ENST00000385243 84 ntBASIC0.61□□□□□ -2.31
MRE11P49959 Y_RNA.185-201ENST00000363894 100 ntBASIC0.6□□□□□ -2.31
MRE11P49959 MIR652-201ENST00000385278 98 ntBASIC0.6□□□□□ -2.31
MRE11P49959 RNU6-604P-201ENST00000390917 100 ntBASIC0.6□□□□□ -2.31
MRE11P49959 RNU6-1232P-201ENST00000516299 86 ntBASIC0.6□□□□□ -2.31
MRE11P49959 SNORA40.17-201ENST00000517256 115 ntBASIC0.6□□□□□ -2.31
MRE11P49959 Y_RNA.125-201ENST00000363371 111 ntBASIC0.59□□□□□ -2.31
MRE11P49959 RNU6-634P-201ENST00000459134 106 ntBASIC0.59□□□□□ -2.31
MRE11P49959 RNU6-848P-201ENST00000515948 107 ntBASIC0.59□□□□□ -2.31
MRE11P49959 RNU6-617P-201ENST00000516147 107 ntBASIC0.59□□□□□ -2.31
MRE11P49959 RNU6-473P-201ENST00000516164 107 ntBASIC0.59□□□□□ -2.31
MRE11P49959 SCARNA17.3-201ENST00000516381 125 ntBASIC0.59□□□□□ -2.31
MRE11P49959 RNU6-1049P-201ENST00000516414 107 ntBASIC0.59□□□□□ -2.31
MRE11P49959 SNORA2.1-201ENST00000363089 137 ntBASIC0.58□□□□□ -2.32
MRE11P49959 SNORD115-22-201ENST00000364456 82 ntBASIC0.58□□□□□ -2.32
MRE11P49959 SNORD115-31-201ENST00000365318 82 ntBASIC0.58□□□□□ -2.32
MRE11P49959 AC073261.1-201ENST00000429409 121 ntBASIC0.58□□□□□ -2.32
MRE11P49959 RNU6-871P-201ENST00000516122 100 ntBASIC0.58□□□□□ -2.32
MRE11P49959 U7.6-201ENST00000610841 64 ntBASIC0.58□□□□□ -2.32
MRE11P49959 MIR8053-201ENST00000613344 75 ntBASIC0.58□□□□□ -2.32
MRE11P49959 uc_338.10-201ENST00000621872 182 ntBASIC0.58□□□□□ -2.32
MRE11P49959 SNORD44.1-201ENST00000363202 61 ntBASIC0.57□□□□□ -2.32
MRE11P49959 RNA5SP299-201ENST00000391203 116 ntBASIC0.57□□□□□ -2.32
MRE11P49959 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
MRE11P49959 SNORD45A-201ENST00000384512 84 ntBASIC0.56□□□□□ -2.32
MRE11P49959 SNORA68.3-201ENST00000515906 83 ntBASIC0.56□□□□□ -2.32
MRE11P49959 RNU6-863P-201ENST00000515989 104 ntBASIC0.56□□□□□ -2.32
MRE11P49959 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.55□□□□□ -2.32
MRE11P49959 MIR501-201ENST00000390204 84 ntBASIC0.55□□□□□ -2.32
MRE11P49959 MIR760-201ENST00000390220 80 ntBASIC0.55□□□□□ -2.32
MRE11P49959 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.55□□□□□ -2.32
MRE11P49959 RNA5SP147-201ENST00000516493 109 ntBASIC0.55□□□□□ -2.32
MRE11P49959 MIR582-201ENST00000365731 98 ntBASIC0.54□□□□□ -2.32
MRE11P49959 AC114737.2-201ENST00000421583 173 ntBASIC0.54□□□□□ -2.32
MRE11P49959 SNORD113.1-201ENST00000363280 73 ntBASIC0.53□□□□□ -2.32
MRE11P49959 RNU6-540P-201ENST00000384622 101 ntBASIC0.53□□□□□ -2.32
MRE11P49959 MIR4677-201ENST00000584153 80 ntBASIC0.53□□□□□ -2.32
MRE11P49959 RNA5SP128-201ENST00000365305 116 ntBASIC0.52□□□□□ -2.33
MRE11P49959 MIR548E-201ENST00000408287 88 ntBASIC0.52□□□□□ -2.33
MRE11P49959 RNU6-881P-201ENST00000516813 102 ntBASIC0.52□□□□□ -2.33
MRE11P49959 MIR548AD-201ENST00000584780 82 ntBASIC0.52□□□□□ -2.33
MRE11P49959 MIR103A1-201ENST00000362165 78 ntBASIC0.51□□□□□ -2.33
MRE11P49959 MIRLET7D-201ENST00000362263 87 ntBASIC0.51□□□□□ -2.33
MRE11P49959 Y_RNA.250-201ENST00000364542 110 ntBASIC0.51□□□□□ -2.33
MRE11P49959 MIR516B1-201ENST00000385211 90 ntBASIC0.51□□□□□ -2.33
MRE11P49959 snoU13.13-201ENST00000458842 104 ntBASIC0.51□□□□□ -2.33
MRE11P49959 AC114801.3-201ENST00000510231 177 ntBASIC0.51□□□□□ -2.33
MRE11P49959 RNU6-982P-201ENST00000516216 102 ntBASIC0.51□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms