Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORD116-22-201ENST00000384430 92 ntBASIC-0.37□□□□□ -2.47
HOXC9P31274 RNA5SP275-201ENST00000363936 118 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 SNORA63.6-201ENST00000364921 119 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 AC096531.1-201ENST00000419107 107 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 SNORD126-201ENST00000459475 77 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 AL590491.3-201ENST00000610731 82 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 MIR4788-201ENST00000639104 80 ntBASIC-0.38□□□□□ -2.47
HOXC9P31274 RNU6-633P-201ENST00000362612 103 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 RNY1P7-201ENST00000384743 110 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 RNU6-402P-201ENST00000410678 103 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 Y_RNA.620-201ENST00000411009 88 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 AL450471.1-201ENST00000447509 127 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 RNU6-274P-201ENST00000459566 107 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 AC021146.9-201ENST00000512503 156 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 RNU6-168P-201ENST00000516189 101 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 AC145423.2-201ENST00000610631 239 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC-0.39□□□□□ -2.47
HOXC9P31274 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 MIR203A-201ENST00000384836 110 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 snoU13.13-201ENST00000458842 104 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 HAR1A.1-201ENST00000459583 118 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 DLEU2_3.2-201ENST00000612883 73 ntBASIC-0.4□□□□□ -2.47
HOXC9P31274 SNORD114-31-201ENST00000363219 75 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 RNU6-901P-201ENST00000384593 106 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 MIR9-2-201ENST00000384838 87 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 MIR196A2-201ENST00000385189 110 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 RNU6-267P-201ENST00000516714 103 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 MIR6509-201ENST00000614603 85 ntBASIC-0.41□□□□□ -2.48
HOXC9P31274 RNU6-208P-201ENST00000362431 107 ntBASIC-0.42□□□□□ -2.48
HOXC9P31274 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC-0.42□□□□□ -2.48
HOXC9P31274 RNA5SP89-201ENST00000410300 108 ntBASIC-0.42□□□□□ -2.48
HOXC9P31274 AL445193.1-201ENST00000441183 141 ntBASIC-0.42□□□□□ -2.48
HOXC9P31274 AL691482.2-201ENST00000457453 84 ntBASIC-0.42□□□□□ -2.48
HOXC9P31274 RNA5SP169-201ENST00000517268 117 ntBASIC-0.42□□□□□ -2.48
HOXC9P31274 RNU6-219P-201ENST00000364728 107 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 RNU6-1039P-201ENST00000383931 107 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.43□□□□□ -2.48
HOXC9P31274 RNA5SP147-201ENST00000516493 109 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 MIR4645-201ENST00000583158 77 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 U6.81-201ENST00000612550 106 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 uc_338.36-201ENST00000622331 158 ntBASIC-0.43□□□□□ -2.48
HOXC9P31274 RNU6-900P-201ENST00000384498 102 ntBASIC-0.44□□□□□ -2.48
HOXC9P31274 RNU6-284P-201ENST00000411105 106 ntBASIC-0.44□□□□□ -2.48
HOXC9P31274 RNU6-1108P-201ENST00000516308 104 ntBASIC-0.44□□□□□ -2.48
HOXC9P31274 SNORA40.17-201ENST00000517256 115 ntBASIC-0.44□□□□□ -2.48
HOXC9P31274 AP001180.6-201ENST00000584918 159 ntBASIC-0.44□□□□□ -2.48
HOXC9P31274 SNORD114-28-201ENST00000363610 72 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 RNU6-1131P-201ENST00000364955 107 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 SNORD77.2-201ENST00000391045 68 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.45□□□□□ -2.48
HOXC9P31274 AC093729.1-201ENST00000513074 128 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 MIR4432-201ENST00000581823 84 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 MIR4493-201ENST00000584016 73 ntBASIC-0.45□□□□□ -2.48
HOXC9P31274 RNU6-502P-201ENST00000362419 108 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 RNU6-1134P-201ENST00000365156 101 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 RNU6-260P-201ENST00000384092 107 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 SNORD56B-201ENST00000384713 71 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 MIR1265-201ENST00000408444 86 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 AC114755.3-201ENST00000481111 251 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 RNA5SP66-201ENST00000517178 101 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 MIR548AZ-201ENST00000616567 95 ntBASIC-0.46□□□□□ -2.48
HOXC9P31274 RNU6-153P-201ENST00000364422 104 ntBASIC-0.47□□□□□ -2.48
HOXC9P31274 Y_RNA.611-201ENST00000410682 108 ntBASIC-0.47□□□□□ -2.48
HOXC9P31274 RNU6-844P-201ENST00000517175 102 ntBASIC-0.47□□□□□ -2.48
HOXC9P31274 MIR6773-201ENST00000612812 74 ntBASIC-0.47□□□□□ -2.48
HOXC9P31274 MIR548BB-201ENST00000626714 66 ntBASIC-0.47□□□□□ -2.48
HOXC9P31274 RNU6-592P-201ENST00000411333 103 ntBASIC-0.48□□□□□ -2.49
HOXC9P31274 MIR3657-201ENST00000584818 117 ntBASIC-0.48□□□□□ -2.49
HOXC9P31274 U6.96-201ENST00000636425 70 ntBASIC-0.48□□□□□ -2.49
HOXC9P31274 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 SNORA32.3-201ENST00000384772 121 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 RNU7-55P-201ENST00000459426 62 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 MIR4436A-201ENST00000585278 85 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 AL391099.1-201ENST00000624635 187 ntBASIC-0.49□□□□□ -2.49
HOXC9P31274 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.49□□□□□ -2.49
HOXC9P31274 RNU6-340P-201ENST00000364005 107 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 RNU6-49P-201ENST00000384256 107 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 RNY4P30-201ENST00000410216 95 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 Y_RNA.606-201ENST00000410579 103 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 SNORD38.3-201ENST00000516599 73 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 MIR4280-201ENST00000582178 76 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 snoR1.1-201ENST00000628177 80 ntBASIC-0.5□□□□□ -2.49
HOXC9P31274 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.51□□□□□ -2.49
HOXC9P31274 SNORA2.1-201ENST00000363089 137 ntBASIC-0.51□□□□□ -2.49
HOXC9P31274 AC140658.3-201ENST00000567603 271 ntBASIC-0.51□□□□□ -2.49
HOXC9P31274 AC093726.3-201ENST00000637588 150 ntBASIC-0.51□□□□□ -2.49
HOXC9P31274 Y_RNA.17-201ENST00000362433 111 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 SNORD114-14-201ENST00000362723 75 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 RNU6-681P-201ENST00000364012 104 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 RNA5SP25-201ENST00000410815 110 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 Z95118.1-201ENST00000421372 247 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 RPS29P8-201ENST00000445109 171 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 MIR5704-201ENST00000584029 77 ntBASIC-0.52□□□□□ -2.49
HOXC9P31274 Y_RNA.264-201ENST00000364665 102 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 350.6 ms