Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 Y_RNA.125-201ENST00000363371 111 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 VTRNA1-3-201ENST00000365645 89 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 Y_RNA.606-201ENST00000410579 103 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 snoU13.13-201ENST00000458842 104 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 AC108740.1-201ENST00000498629 225 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 RNA5SP134-201ENST00000516492 96 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 Y_RNA.685-201ENST00000516532 108 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 RNU6-807P-201ENST00000516805 107 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 MIR4677-201ENST00000584153 80 ntBASIC0.36□□□□□ -2.35
FOXN3O00409 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
FOXN3O00409 RNU6-681P-201ENST00000364012 104 ntBASIC0.35□□□□□ -2.35
FOXN3O00409 RNU6-1039P-201ENST00000383931 107 ntBASIC0.35□□□□□ -2.35
FOXN3O00409 MIR643-201ENST00000385267 97 ntBASIC0.35□□□□□ -2.35
FOXN3O00409 RNA5SP395-201ENST00000516567 118 ntBASIC0.35□□□□□ -2.35
FOXN3O00409 uc_338.10-201ENST00000621872 182 ntBASIC0.35□□□□□ -2.35
FOXN3O00409 MIR582-201ENST00000365731 98 ntBASIC0.34□□□□□ -2.36
FOXN3O00409 RNU6-24P-201ENST00000384440 107 ntBASIC0.34□□□□□ -2.36
FOXN3O00409 AC074348.1-201ENST00000426503 132 ntBASIC0.34□□□□□ -2.36
FOXN3O00409 RNU7-24P-201ENST00000458867 62 ntBASIC0.34□□□□□ -2.36
FOXN3O00409 RNU7-188P-201ENST00000517063 64 ntBASIC0.34□□□□□ -2.36
FOXN3O00409 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
FOXN3O00409 MIR3134-201ENST00000579433 74 ntBASIC0.33□□□□□ -2.36
FOXN3O00409 U7.6-201ENST00000610841 64 ntBASIC0.33□□□□□ -2.36
FOXN3O00409 SNORA9.1-201ENST00000362412 131 ntBASIC0.32□□□□□ -2.36
FOXN3O00409 RNU6-127P-201ENST00000390897 107 ntBASIC0.32□□□□□ -2.36
FOXN3O00409 SCARNA17.3-201ENST00000516381 125 ntBASIC0.32□□□□□ -2.36
FOXN3O00409 MIR4514-201ENST00000581410 57 ntBASIC0.32□□□□□ -2.36
FOXN3O00409 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.31□□□□□ -2.36
FOXN3O00409 SNORA40.17-201ENST00000517256 115 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 AC069113.3-201ENST00000521019 150 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 MIR3925-201ENST00000584674 77 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 MIR548AD-201ENST00000584780 82 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 MIR3657-201ENST00000584818 117 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 MIR2909-201ENST00000617113 69 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 AC084368.1-201ENST00000620935 65 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 MIR1297-201ENST00000637311 77 ntBASIC0.31□□□□□ -2.36
FOXN3O00409 RNU6-604P-201ENST00000390917 100 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 MIR548E-201ENST00000408287 88 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 RNU6-70P-201ENST00000516438 60 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 RNU6-638P-201ENST00000516582 104 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 SNORA62.5-201ENST00000516634 120 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 MIR3675-201ENST00000583661 73 ntBASIC0.3□□□□□ -2.36
FOXN3O00409 SNORD114-4-201ENST00000363962 75 ntBASIC0.29□□□□□ -2.36
FOXN3O00409 RNU6-260P-201ENST00000384092 107 ntBASIC0.29□□□□□ -2.36
FOXN3O00409 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
FOXN3O00409 AC021146.9-201ENST00000512503 156 ntBASIC0.29□□□□□ -2.36
FOXN3O00409 AC145423.2-201ENST00000610631 239 ntBASIC0.29□□□□□ -2.36
FOXN3O00409 U7.4-201ENST00000614961 63 ntBASIC0.29□□□□□ -2.36
FOXN3O00409 SNORD45.1-201ENST00000363181 77 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 MIR106A-201ENST00000384870 81 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 RNU6-752P-201ENST00000516376 102 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 SCARNA11.2-201ENST00000517183 154 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 MIR4315-1-201ENST00000636800 73 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 MIR4315-2-201ENST00000640925 73 ntBASIC0.28□□□□□ -2.36
FOXN3O00409 RNA5SP257-201ENST00000363023 116 ntBASIC0.27□□□□□ -2.37
FOXN3O00409 Y_RNA.681-201ENST00000516445 113 ntBASIC0.27□□□□□ -2.37
FOXN3O00409 RN7SL660P-201ENST00000614852 299 ntBASIC0.27□□□□□ -2.37
FOXN3O00409 Y_RNA.545-201ENST00000384652 105 ntBASIC0.26□□□□□ -2.37
FOXN3O00409 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.26□□□□□ -2.37
FOXN3O00409 RNU6-776P-201ENST00000364403 104 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 SNORD114-29-201ENST00000364819 70 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 RNU6-1022P-201ENST00000365049 104 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 RNU6-1036P-201ENST00000383959 104 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 SNORD45A-201ENST00000384512 84 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 RNU6-1241P-201ENST00000384536 107 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 RNU6-175P-201ENST00000516896 107 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 AC023932.2-201ENST00000603176 175 ntBASIC0.25□□□□□ -2.37
FOXN3O00409 MIR20A-201ENST00000362279 71 ntBASIC0.24□□□□□ -2.37
FOXN3O00409 SNORA2.1-201ENST00000363089 137 ntBASIC0.24□□□□□ -2.37
FOXN3O00409 SNORA63.6-201ENST00000364921 119 ntBASIC0.24□□□□□ -2.37
FOXN3O00409 MIR154-201ENST00000385243 84 ntBASIC0.24□□□□□ -2.37
FOXN3O00409 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
FOXN3O00409 Y_RNA.565-201ENST00000384719 101 ntBASIC0.23□□□□□ -2.37
FOXN3O00409 RNU6-982P-201ENST00000516216 102 ntBASIC0.23□□□□□ -2.37
FOXN3O00409 RNU6-1015P-201ENST00000517121 99 ntBASIC0.23□□□□□ -2.37
FOXN3O00409 MIR593-201ENST00000384856 100 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 RNA5SP63-201ENST00000391225 112 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 RNA5SP163-201ENST00000410304 99 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 AC244090.1-201ENST00000441884 93 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 AC104408.1-201ENST00000605241 170 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 MIR6718-201ENST00000616153 80 ntBASIC0.22□□□□□ -2.37
FOXN3O00409 Y_RNA.68-201ENST00000362881 102 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 SNORD115-31-201ENST00000365318 82 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 RNU6-411P-201ENST00000384451 107 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 SNORA49-201ENST00000386157 136 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 SNORA75.1-201ENST00000391130 148 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 RNU6-587P-201ENST00000391282 106 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 MIR6514-201ENST00000622549 70 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 MIR4662A-201ENST00000637499 67 ntBASIC0.21□□□□□ -2.38
FOXN3O00409 SNORD114-5-201ENST00000362928 70 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 SNORA42.1-201ENST00000363515 137 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 SNORD115-22-201ENST00000364456 82 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 SNORA33.1-201ENST00000364957 130 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 MIR876-201ENST00000401147 81 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 RNU6-687P-201ENST00000516443 89 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 RNU6-782P-201ENST00000516852 104 ntBASIC0.2□□□□□ -2.38
FOXN3O00409 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC0.2□□□□□ -2.38
FOXN3O00409 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
FOXN3O00409 MIR548H2-201ENST00000408874 88 ntBASIC0.19□□□□□ -2.38
FOXN3O00409 RNU6-523P-201ENST00000516304 54 ntBASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 211.9 ms