Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 SNORD1B-201ENST00000363091 84 ntBASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 MIR1255B2-201ENST00000408618 67 ntBASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 AC006210.1-201ENST00000424882 111 ntBASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 AC243829.6-201ENST00000612652 106 ntBASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 AC090617.8-201ENST00000623339 167 ntBASIC1.89□□□□□ -2.11
VPS9D1Q9Y2B5 Y_RNA.224-201ENST00000364308 111 ntBASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 MIR676-201ENST00000390702 67 ntBASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 AC002429.1-201ENST00000437672 148 ntBASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 MIR4490-201ENST00000582647 84 ntBASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
VPS9D1Q9Y2B5 HMGN2P19-201ENST00000425149 265 ntBASIC1.87□□□□□ -2.11
VPS9D1Q9Y2B5 AC243829.3-201ENST00000622177 108 ntBASIC1.87□□□□□ -2.11
VPS9D1Q9Y2B5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 MIR222-201ENST00000384992 110 ntBASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 SNORD110-201ENST00000408189 75 ntBASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 AC008834.1-201ENST00000511612 175 ntBASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 RNA5SP182-201ENST00000516064 82 ntBASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VPS9D1Q9Y2B5 SNORA16.1-201ENST00000364597 132 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 RNU6-1250P-201ENST00000391218 107 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 RNA5SP489-201ENST00000410986 109 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 AL603825.1-201ENST00000438481 80 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 AC012493.3-201ENST00000604494 112 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 MIR6828-201ENST00000636181 60 ntBASIC1.85□□□□□ -2.11
VPS9D1Q9Y2B5 SNORA26.9-201ENST00000391322 122 ntBASIC1.84□□□□□ -2.11
VPS9D1Q9Y2B5 RNA5SP227-201ENST00000516184 113 ntBASIC1.84□□□□□ -2.11
VPS9D1Q9Y2B5 MIR3612-201ENST00000579753 87 ntBASIC1.84□□□□□ -2.11
VPS9D1Q9Y2B5 MIR429-201ENST00000362106 83 ntBASIC1.83□□□□□ -2.12
VPS9D1Q9Y2B5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
VPS9D1Q9Y2B5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 Y_RNA.109-201ENST00000363215 102 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 MIR573-201ENST00000384964 99 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 RNU6-482P-201ENST00000391068 107 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 FABP5P4-201ENST00000437203 171 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 RNU6ATAC14P-201ENST00000516218 91 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 MIR6845-201ENST00000613182 61 ntBASIC1.82□□□□□ -2.12
VPS9D1Q9Y2B5 RNU6-724P-201ENST00000390958 105 ntBASIC1.81□□□□□ -2.12
VPS9D1Q9Y2B5 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
VPS9D1Q9Y2B5 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
VPS9D1Q9Y2B5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS9D1Q9Y2B5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VPS9D1Q9Y2B5 RNU6-295P-201ENST00000516901 104 ntBASIC1.8□□□□□ -2.12
VPS9D1Q9Y2B5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.8□□□□□ -2.12
VPS9D1Q9Y2B5 AC003989.2-201ENST00000440224 169 ntBASIC1.79□□□□□ -2.12
VPS9D1Q9Y2B5 RNU7-154P-201ENST00000516194 62 ntBASIC1.79□□□□□ -2.12
VPS9D1Q9Y2B5 MIR4419B-201ENST00000577260 68 ntBASIC1.79□□□□□ -2.12
VPS9D1Q9Y2B5 MIR548AG1-201ENST00000579932 66 ntBASIC1.79□□□□□ -2.12
VPS9D1Q9Y2B5 AL353997.5-201ENST00000618886 171 ntBASIC1.79□□□□□ -2.12
VPS9D1Q9Y2B5 MIR583-201ENST00000384846 75 ntBASIC1.78□□□□□ -2.12
VPS9D1Q9Y2B5 RNU6-924P-201ENST00000362926 108 ntBASIC1.77□□□□□ -2.13
VPS9D1Q9Y2B5 AC244090.1-201ENST00000441884 93 ntBASIC1.77□□□□□ -2.13
VPS9D1Q9Y2B5 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.77□□□□□ -2.13
VPS9D1Q9Y2B5 MIR20A-201ENST00000362279 71 ntBASIC1.76□□□□□ -2.13
VPS9D1Q9Y2B5 MIR3122-201ENST00000577243 73 ntBASIC1.76□□□□□ -2.13
VPS9D1Q9Y2B5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 SNORD115-25-201ENST00000362619 82 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 RNU1-17P-201ENST00000363022 152 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 RNU6-458P-201ENST00000384179 107 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 SNORD2-201ENST00000459163 69 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 RNU7-160P-201ENST00000516660 62 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 U6.58-201ENST00000613107 107 ntBASIC1.75□□□□□ -2.13
VPS9D1Q9Y2B5 SNORA25-201ENST00000384384 134 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 MIR9-3-201ENST00000385084 90 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 RNU6-696P-201ENST00000390834 107 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 RNU6-1206P-201ENST00000516339 103 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 RNA5SP470-201ENST00000516463 106 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 RNA5SP268-201ENST00000516828 124 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 MIR548AL-201ENST00000578416 97 ntBASIC1.74□□□□□ -2.13
VPS9D1Q9Y2B5 RNU6-986P-201ENST00000363133 102 ntBASIC1.73□□□□□ -2.13
VPS9D1Q9Y2B5 MIR579-201ENST00000385221 98 ntBASIC1.73□□□□□ -2.13
VPS9D1Q9Y2B5 SNORA17.3-201ENST00000391159 129 ntBASIC1.73□□□□□ -2.13
VPS9D1Q9Y2B5 AC025627.3-201ENST00000582078 182 ntBASIC1.73□□□□□ -2.13
VPS9D1Q9Y2B5 SNORA36.1-201ENST00000363424 132 ntBASIC1.72□□□□□ -2.13
VPS9D1Q9Y2B5 RNA5SP458-201ENST00000516188 119 ntBASIC1.72□□□□□ -2.13
VPS9D1Q9Y2B5 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS9D1Q9Y2B5 RNU6-337P-201ENST00000391243 106 ntBASIC1.71□□□□□ -2.14
VPS9D1Q9Y2B5 AC084768.2-201ENST00000622736 221 ntBASIC1.71□□□□□ -2.14
VPS9D1Q9Y2B5 MIR4255-201ENST00000579351 72 ntBASIC1.7□□□□□ -2.14
VPS9D1Q9Y2B5 SNORA70.25-201ENST00000612741 95 ntBASIC1.7□□□□□ -2.14
VPS9D1Q9Y2B5 Y_RNA.69-201ENST00000362885 109 ntBASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 SNORD48-201ENST00000364953 64 ntBASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 MIR7107-201ENST00000611489 80 ntBASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 MIR6773-201ENST00000612812 74 ntBASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
VPS9D1Q9Y2B5 HMGN2P22-201ENST00000427588 175 ntBASIC1.68□□□□□ -2.14
VPS9D1Q9Y2B5 RNU7-151P-201ENST00000516930 53 ntBASIC1.68□□□□□ -2.14
VPS9D1Q9Y2B5 MIR502-201ENST00000606349 86 ntBASIC1.68□□□□□ -2.14
VPS9D1Q9Y2B5 MIR8081-201ENST00000611533 95 ntBASIC1.68□□□□□ -2.14
VPS9D1Q9Y2B5 MIR18A-201ENST00000362310 71 ntBASIC1.67□□□□□ -2.14
VPS9D1Q9Y2B5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
VPS9D1Q9Y2B5 RNA5SP327-201ENST00000362494 101 ntBASIC1.66□□□□□ -2.14
VPS9D1Q9Y2B5 MIR200A-201ENST00000384875 90 ntBASIC1.66□□□□□ -2.14
VPS9D1Q9Y2B5 MIR329-2-201ENST00000385029 84 ntBASIC1.66□□□□□ -2.14
VPS9D1Q9Y2B5 AC108667.1-201ENST00000428618 249 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 260.8 ms