Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-972P-201ENST00000391208 107 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 RNU6-519P-201ENST00000410590 108 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 AC006210.1-201ENST00000424882 111 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 Y_RNA.677-201ENST00000516401 85 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 SNORA40.17-201ENST00000517256 115 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 MIR548AD-201ENST00000584780 82 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 AC104408.1-201ENST00000605241 170 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.09□□□□□ -2.4
CDX2Q99626 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.09□□□□□ -2.4
CDX2Q99626 SNORD114-5-201ENST00000362928 70 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 Y_RNA.125-201ENST00000363371 111 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNA5SP214-201ENST00000363378 118 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 SNORD114-9-201ENST00000364370 72 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-32P-201ENST00000383948 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-13P-201ENST00000384248 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-1113P-201ENST00000384348 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 Y_RNA.491-201ENST00000384417 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-12P-201ENST00000384604 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 Y_RNA.544-201ENST00000384650 113 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-41P-201ENST00000384741 107 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 MIR593-201ENST00000384856 100 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNY4P30-201ENST00000410216 95 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 Y_RNA.610-201ENST00000410681 103 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 SNORA40.13-201ENST00000516379 120 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 MIR4460-201ENST00000577862 86 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 MIR548O2-201ENST00000616090 70 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 MIR4315-1-201ENST00000636800 73 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 MIR4315-2-201ENST00000640925 73 ntBASIC0.08□□□□□ -2.4
CDX2Q99626 RNU6-161P-201ENST00000363051 106 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-824P-201ENST00000363724 104 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-990P-201ENST00000364385 104 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-497P-201ENST00000365316 104 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-1051P-201ENST00000365471 102 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-811P-201ENST00000384069 107 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 Y_RNA.558-201ENST00000384685 113 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 MIR516B1-201ENST00000385211 90 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 Y_RNA.593-201ENST00000410292 98 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-935P-201ENST00000410371 100 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 Y_RNA.620-201ENST00000411009 88 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-175P-201ENST00000516896 107 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU7-188P-201ENST00000517063 64 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 RNU6-158P-201ENST00000517104 100 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 SCARNA11.2-201ENST00000517183 154 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 MIR4668-201ENST00000582284 70 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 MIR4723-201ENST00000585070 81 ntBASIC0.07□□□□□ -2.4
CDX2Q99626 MIR101-1-201ENST00000362265 75 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 SNORD116-10-201ENST00000363791 102 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 Y_RNA.239-201ENST00000364444 113 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 SNORD115-44-201ENST00000365391 82 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 Y_RNA.437-201ENST00000384113 113 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 MIR145-201ENST00000384967 88 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 SNORA49-201ENST00000386157 136 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 SNORA25.13-201ENST00000516395 103 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 MIR5582-201ENST00000579697 68 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 MIR5706-201ENST00000579841 80 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 AC069503.3-201ENST00000618674 145 ntBASIC0.06□□□□□ -2.4
CDX2Q99626 Y_RNA.17-201ENST00000362433 111 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 RNU6-509P-201ENST00000363519 107 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 RNU6-154P-201ENST00000384306 106 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 RNU6-1057P-201ENST00000517162 102 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 RNU6-844P-201ENST00000517175 102 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 MIR4796-201ENST00000580742 81 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 AC145423.2-201ENST00000610631 239 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 MIR548BB-201ENST00000626714 66 ntBASIC0.05□□□□□ -2.4
CDX2Q99626 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.04□□□□□ -2.4
CDX2Q99626 SNORA63.2-201ENST00000362603 126 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 RNU6-382P-201ENST00000365181 106 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 RNU6-929P-201ENST00000384429 107 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 MIR203A-201ENST00000384836 110 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
CDX2Q99626 AL450471.1-201ENST00000447509 127 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 snoU13.13-201ENST00000458842 104 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 AC073869.9-201ENST00000641610 120 ntBASIC0.04□□□□□ -2.4
CDX2Q99626 RNU6-633P-201ENST00000362612 103 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 RNU6-495P-201ENST00000362995 107 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 RNU6-330P-201ENST00000363015 107 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 RNU6-478P-201ENST00000363904 110 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 Y_RNA.532-201ENST00000384590 113 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 RNA5SP163-201ENST00000410304 99 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 RNU6-1108P-201ENST00000516308 104 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 AC084368.1-201ENST00000620935 65 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 AC090617.8-201ENST00000623339 167 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 Clostridiales-1.4-201ENST00000636807 150 ntBASIC0.03□□□□□ -2.4
CDX2Q99626 MIR494-201ENST00000349529 81 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 Y_RNA.407-201ENST00000383986 113 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 RNU6-675P-201ENST00000384236 104 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
CDX2Q99626 MIR548U-201ENST00000390728 81 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 MIR876-201ENST00000401147 81 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 MIR548E-201ENST00000408287 88 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 Y_RNA.611-201ENST00000410682 108 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 MIR6507-201ENST00000613630 70 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 uc_338.10-201ENST00000621872 182 ntBASIC0.02□□□□□ -2.41
CDX2Q99626 SNORD114-16-201ENST00000363044 70 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-302P-201ENST00000365249 107 ntBASIC0.01□□□□□ -2.41
CDX2Q99626 RNU6-1036P-201ENST00000383959 104 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 194.5 ms