Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 MIR4661-201ENST00000582720 75 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 AL353765.1-201ENST00000605514 183 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 AC103810.9-201ENST00000606688 112 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-1241P-201ENST00000384536 107 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 MIR508-201ENST00000384857 115 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 MIR154-201ENST00000385243 84 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 MT-TY-201ENST00000387409 66 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 AL691482.2-201ENST00000457453 84 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 AC114801.3-201ENST00000510231 177 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 RN7SL793P-201ENST00000583259 296 ntBASIC1.03□□□□□ -2.24
USHBP1Q8N6Y0 RNU1-141P-201ENST00000364623 158 ntBASIC1.02□□□□□ -2.25
USHBP1Q8N6Y0 RNU6V-201ENST00000384105 107 ntBASIC1.02□□□□□ -2.25
USHBP1Q8N6Y0 MIR216A-201ENST00000385063 110 ntBASIC1.02□□□□□ -2.25
USHBP1Q8N6Y0 RNA5SP222-201ENST00000411039 105 ntBASIC1.02□□□□□ -2.25
USHBP1Q8N6Y0 RNA5SP227-201ENST00000516184 113 ntBASIC1.02□□□□□ -2.25
USHBP1Q8N6Y0 SNORD114-2-201ENST00000363953 78 ntBASIC1.01□□□□□ -2.25
USHBP1Q8N6Y0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.01□□□□□ -2.25
USHBP1Q8N6Y0 RNA5SP268-201ENST00000516828 124 ntBASIC1.01□□□□□ -2.25
USHBP1Q8N6Y0 MIR6835-201ENST00000621552 64 ntBASIC1.01□□□□□ -2.25
USHBP1Q8N6Y0 SNORD45.1-201ENST00000363181 77 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 SNORA36.1-201ENST00000363424 132 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 RNU6-54P-201ENST00000365563 107 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 RPL39P28-201ENST00000465655 155 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 RNA5SP94-201ENST00000516917 108 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 AL162376.1-201ENST00000624117 175 ntBASIC1□□□□□ -2.25
USHBP1Q8N6Y0 RNU6-351P-201ENST00000516097 100 ntBASIC0.99□□□□□ -2.25
USHBP1Q8N6Y0 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.99□□□□□ -2.25
USHBP1Q8N6Y0 NAMPTP3-201ENST00000569273 224 ntBASIC0.99□□□□□ -2.25
USHBP1Q8N6Y0 MIR8053-201ENST00000613344 75 ntBASIC0.99□□□□□ -2.25
USHBP1Q8N6Y0 RNU6-1039P-201ENST00000383931 107 ntBASIC0.98□□□□□ -2.25
USHBP1Q8N6Y0 MIR6509-201ENST00000614603 85 ntBASIC0.97□□□□□ -2.25
USHBP1Q8N6Y0 RNU6-788P-201ENST00000390967 104 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 RNA5SP484-201ENST00000458857 111 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 SNORD42B-201ENST00000458893 67 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 ACA64.5-201ENST00000516207 127 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 AC069503.3-201ENST00000618674 145 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 MIR6513-201ENST00000621188 64 ntBASIC0.96□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-540P-201ENST00000384622 101 ntBASIC0.95□□□□□ -2.26
USHBP1Q8N6Y0 MIR608-201ENST00000384820 100 ntBASIC0.95□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-539P-201ENST00000516665 103 ntBASIC0.95□□□□□ -2.26
USHBP1Q8N6Y0 AC073869.9-201ENST00000641610 120 ntBASIC0.95□□□□□ -2.26
USHBP1Q8N6Y0 SNORD114-4-201ENST00000363962 75 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 SNORD115-31-201ENST00000365318 82 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 SNORA36.2-201ENST00000384004 127 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-260P-201ENST00000384092 107 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-649P-201ENST00000384463 107 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 SNORD30.1-201ENST00000391309 70 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 RNU5B-6P-201ENST00000516765 68 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 MIR6866-201ENST00000638146 69 ntBASIC0.94□□□□□ -2.26
USHBP1Q8N6Y0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
USHBP1Q8N6Y0 SNORD115-22-201ENST00000364456 82 ntBASIC0.93□□□□□ -2.26
USHBP1Q8N6Y0 MIR936-201ENST00000401264 98 ntBASIC0.93□□□□□ -2.26
USHBP1Q8N6Y0 MIR7107-201ENST00000611489 80 ntBASIC0.93□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-895P-201ENST00000384125 103 ntBASIC0.92□□□□□ -2.26
USHBP1Q8N6Y0 AC018659.1-201ENST00000551083 169 ntBASIC0.92□□□□□ -2.26
USHBP1Q8N6Y0 RNU6-590P-201ENST00000365039 107 ntBASIC0.91□□□□□ -2.26
USHBP1Q8N6Y0 SNORD45A-201ENST00000384512 84 ntBASIC0.91□□□□□ -2.26
USHBP1Q8N6Y0 MIR203A-201ENST00000384836 110 ntBASIC0.91□□□□□ -2.26
USHBP1Q8N6Y0 RNA5SP193-201ENST00000410353 107 ntBASIC0.91□□□□□ -2.26
USHBP1Q8N6Y0 MIR4653-201ENST00000585107 83 ntBASIC0.91□□□□□ -2.26
USHBP1Q8N6Y0 RNA5SP499-201ENST00000363982 119 ntBASIC0.9□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-604P-201ENST00000390917 100 ntBASIC0.9□□□□□ -2.27
USHBP1Q8N6Y0 SNORD110-201ENST00000408189 75 ntBASIC0.9□□□□□ -2.27
USHBP1Q8N6Y0 AC098934.3-201ENST00000430450 190 ntBASIC0.9□□□□□ -2.27
USHBP1Q8N6Y0 SNORD113.1-201ENST00000363280 73 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 RNA5SP517-201ENST00000364724 117 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 MIR140-201ENST00000385282 100 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-663P-201ENST00000391105 106 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 PSMC1P5-201ENST00000512850 177 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-881P-201ENST00000516813 102 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 MIR3657-201ENST00000584818 117 ntBASIC0.89□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-110P-201ENST00000384508 104 ntBASIC0.88□□□□□ -2.27
USHBP1Q8N6Y0 MIR146A-201ENST00000385201 99 ntBASIC0.88□□□□□ -2.27
USHBP1Q8N6Y0 AC006210.1-201ENST00000424882 111 ntBASIC0.88□□□□□ -2.27
USHBP1Q8N6Y0 AC092634.7-201ENST00000621022 103 ntBASIC0.88□□□□□ -2.27
USHBP1Q8N6Y0 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.87□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-1216P-201ENST00000362590 107 ntBASIC0.87□□□□□ -2.27
USHBP1Q8N6Y0 RNY1P8-201ENST00000383970 114 ntBASIC0.87□□□□□ -2.27
USHBP1Q8N6Y0 AL590095.2-201ENST00000604136 117 ntBASIC0.87□□□□□ -2.27
USHBP1Q8N6Y0 Y_RNA.407-201ENST00000383986 113 ntBASIC0.86□□□□□ -2.27
USHBP1Q8N6Y0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.86□□□□□ -2.27
USHBP1Q8N6Y0 U6.111-201ENST00000636093 83 ntBASIC0.86□□□□□ -2.27
USHBP1Q8N6Y0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
USHBP1Q8N6Y0 SNORA2.1-201ENST00000363089 137 ntBASIC0.85□□□□□ -2.27
USHBP1Q8N6Y0 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.85□□□□□ -2.27
USHBP1Q8N6Y0 SNORD118-201ENST00000363593 134 ntBASIC0.84□□□□□ -2.27
USHBP1Q8N6Y0 SNORA40.8-201ENST00000411034 126 ntBASIC0.84□□□□□ -2.27
USHBP1Q8N6Y0 AC069271.1-201ENST00000445577 156 ntBASIC0.84□□□□□ -2.27
USHBP1Q8N6Y0 MIR4711-201ENST00000578274 70 ntBASIC0.84□□□□□ -2.27
USHBP1Q8N6Y0 MIR5706-201ENST00000579841 80 ntBASIC0.84□□□□□ -2.27
USHBP1Q8N6Y0 RNU6-990P-201ENST00000364385 104 ntBASIC0.83□□□□□ -2.28
USHBP1Q8N6Y0 MIR193B-201ENST00000384907 83 ntBASIC0.83□□□□□ -2.28
USHBP1Q8N6Y0 MIR4752-201ENST00000579672 72 ntBASIC0.83□□□□□ -2.28
USHBP1Q8N6Y0 uc_338.10-201ENST00000621872 182 ntBASIC0.83□□□□□ -2.28
USHBP1Q8N6Y0 RNU6-800P-201ENST00000384473 103 ntBASIC0.82□□□□□ -2.28
USHBP1Q8N6Y0 MIR652-201ENST00000385278 98 ntBASIC0.82□□□□□ -2.28
USHBP1Q8N6Y0 SNORA25.18-201ENST00000607153 114 ntBASIC0.82□□□□□ -2.28
USHBP1Q8N6Y0 SNORA70.25-201ENST00000612741 95 ntBASIC0.82□□□□□ -2.28
USHBP1Q8N6Y0 Y_RNA.250-201ENST00000364542 110 ntBASIC0.81□□□□□ -2.28
USHBP1Q8N6Y0 RNU6-630P-201ENST00000391258 106 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms