Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 RNA5SP190-201ENST00000365222 118 ntBASIC1.46□□□□□ -2.18
RETREG3Q86VR2 SNORA15B-2-201ENST00000384058 135 ntBASIC1.46□□□□□ -2.18
RETREG3Q86VR2 SNORA15B-1-201ENST00000384334 135 ntBASIC1.46□□□□□ -2.18
RETREG3Q86VR2 RNA5SP94-201ENST00000516917 108 ntBASIC1.46□□□□□ -2.18
RETREG3Q86VR2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
RETREG3Q86VR2 SNORA63.6-201ENST00000364921 119 ntBASIC1.45□□□□□ -2.18
RETREG3Q86VR2 MIR1323-201ENST00000408090 73 ntBASIC1.45□□□□□ -2.18
RETREG3Q86VR2 RNA5SP61-201ENST00000516453 100 ntBASIC1.45□□□□□ -2.18
RETREG3Q86VR2 MIR7107-201ENST00000611489 80 ntBASIC1.45□□□□□ -2.18
RETREG3Q86VR2 uc_338.10-201ENST00000621872 182 ntBASIC1.45□□□□□ -2.18
RETREG3Q86VR2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.45□□□□□ -2.18
RETREG3Q86VR2 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC1.44□□□□□ -2.18
RETREG3Q86VR2 MIR630-201ENST00000384957 97 ntBASIC1.44□□□□□ -2.18
RETREG3Q86VR2 MIR548AE1-201ENST00000583292 70 ntBASIC1.44□□□□□ -2.18
RETREG3Q86VR2 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
RETREG3Q86VR2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
RETREG3Q86VR2 SNORA33.1-201ENST00000364957 130 ntBASIC1.43□□□□□ -2.18
RETREG3Q86VR2 MIR1304-201ENST00000408243 91 ntBASIC1.43□□□□□ -2.18
RETREG3Q86VR2 RNA5SP222-201ENST00000411039 105 ntBASIC1.43□□□□□ -2.18
RETREG3Q86VR2 RNU6-122P-201ENST00000516818 107 ntBASIC1.43□□□□□ -2.18
RETREG3Q86VR2 Y_RNA.236-201ENST00000364427 111 ntBASIC1.42□□□□□ -2.18
RETREG3Q86VR2 MIR517B-201ENST00000385102 67 ntBASIC1.42□□□□□ -2.18
RETREG3Q86VR2 Y_RNA.633-201ENST00000459107 95 ntBASIC1.42□□□□□ -2.18
RETREG3Q86VR2 SNORD13-201ENST00000459299 104 ntBASIC1.42□□□□□ -2.18
RETREG3Q86VR2 BX248123.2-201ENST00000606318 124 ntBASIC1.42□□□□□ -2.18
RETREG3Q86VR2 SNORA75.1-201ENST00000391130 148 ntBASIC1.41□□□□□ -2.18
RETREG3Q86VR2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.41□□□□□ -2.18
RETREG3Q86VR2 MIR7974-201ENST00000615835 79 ntBASIC1.41□□□□□ -2.18
RETREG3Q86VR2 RNU1-42P-201ENST00000364033 160 ntBASIC1.4□□□□□ -2.19
RETREG3Q86VR2 SNORD53B-201ENST00000577887 78 ntBASIC1.4□□□□□ -2.19
RETREG3Q86VR2 U2.7-201ENST00000619197 100 ntBASIC1.4□□□□□ -2.19
RETREG3Q86VR2 Y_RNA.125-201ENST00000363371 111 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 MIR582-201ENST00000365731 98 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 SNORD113-2-201ENST00000391082 72 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 RNU6-955P-201ENST00000410497 104 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 AL603825.1-201ENST00000438481 80 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 MIR3938-201ENST00000582157 103 ntBASIC1.39□□□□□ -2.19
RETREG3Q86VR2 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.38□□□□□ -2.19
RETREG3Q86VR2 MIR378A-201ENST00000362177 66 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 SNORD60.1-201ENST00000362451 73 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 MIR548E-201ENST00000408287 88 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 AC108667.1-201ENST00000428618 249 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 RNU7-174P-201ENST00000516248 59 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 SNORA70.25-201ENST00000612741 95 ntBASIC1.38□□□□□ -2.19
RETREG3Q86VR2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
RETREG3Q86VR2 RNU6-698P-201ENST00000363523 107 ntBASIC1.37□□□□□ -2.19
RETREG3Q86VR2 RNU6-34P-201ENST00000364874 107 ntBASIC1.37□□□□□ -2.19
RETREG3Q86VR2 MIR150-201ENST00000385048 84 ntBASIC1.37□□□□□ -2.19
RETREG3Q86VR2 MIR517C-201ENST00000385103 95 ntBASIC1.37□□□□□ -2.19
RETREG3Q86VR2 MIR4752-201ENST00000579672 72 ntBASIC1.37□□□□□ -2.19
RETREG3Q86VR2 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
RETREG3Q86VR2 AL354695.1-201ENST00000427935 228 ntBASIC1.36□□□□□ -2.19
RETREG3Q86VR2 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.36□□□□□ -2.19
RETREG3Q86VR2 AL353765.1-201ENST00000605514 183 ntBASIC1.36□□□□□ -2.19
RETREG3Q86VR2 AC068338.1-201ENST00000565567 176 ntBASIC1.35□□□□□ -2.19
RETREG3Q86VR2 SNORA67.6-201ENST00000391093 99 ntBASIC1.34□□□□□ -2.19
RETREG3Q86VR2 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.34□□□□□ -2.19
RETREG3Q86VR2 RNU6-446P-201ENST00000362827 106 ntBASIC1.33□□□□□ -2.2
RETREG3Q86VR2 SNORA36.2-201ENST00000384004 127 ntBASIC1.33□□□□□ -2.2
RETREG3Q86VR2 MIR4498-201ENST00000577599 66 ntBASIC1.33□□□□□ -2.2
RETREG3Q86VR2 U6.96-201ENST00000636425 70 ntBASIC1.33□□□□□ -2.2
RETREG3Q86VR2 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
RETREG3Q86VR2 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
RETREG3Q86VR2 snoU13.31-201ENST00000607291 104 ntBASIC1.32□□□□□ -2.2
RETREG3Q86VR2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
RETREG3Q86VR2 SNORA17.3-201ENST00000391159 129 ntBASIC1.31□□□□□ -2.2
RETREG3Q86VR2 RNU6-1053P-201ENST00000515930 101 ntBASIC1.31□□□□□ -2.2
RETREG3Q86VR2 U4.4-201ENST00000620626 117 ntBASIC1.31□□□□□ -2.2
RETREG3Q86VR2 RNY1P8-201ENST00000383970 114 ntBASIC1.3□□□□□ -2.2
RETREG3Q86VR2 RNU4-62P-201ENST00000410125 130 ntBASIC1.3□□□□□ -2.2
RETREG3Q86VR2 SNORA31.24-201ENST00000517232 57 ntBASIC1.3□□□□□ -2.2
RETREG3Q86VR2 HMGN2P22-201ENST00000427588 175 ntBASIC1.29□□□□□ -2.2
RETREG3Q86VR2 MIR4303-201ENST00000581299 66 ntBASIC1.29□□□□□ -2.2
RETREG3Q86VR2 RNA5SP517-201ENST00000364724 117 ntBASIC1.28□□□□□ -2.2
RETREG3Q86VR2 MIR5706-201ENST00000579841 80 ntBASIC1.28□□□□□ -2.2
RETREG3Q86VR2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.28□□□□□ -2.2
RETREG3Q86VR2 MIR516B1-201ENST00000385211 90 ntBASIC1.27□□□□□ -2.21
RETREG3Q86VR2 AP1B1P2-201ENST00000416196 106 ntBASIC1.27□□□□□ -2.21
RETREG3Q86VR2 AC069271.1-201ENST00000445577 156 ntBASIC1.27□□□□□ -2.21
RETREG3Q86VR2 CYP3A54P-201ENST00000566950 75 ntBASIC1.27□□□□□ -2.21
RETREG3Q86VR2 MIR4661-201ENST00000582720 75 ntBASIC1.27□□□□□ -2.21
RETREG3Q86VR2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
RETREG3Q86VR2 MIR20A-201ENST00000362279 71 ntBASIC1.26□□□□□ -2.21
RETREG3Q86VR2 Y_RNA.246-201ENST00000364495 108 ntBASIC1.26□□□□□ -2.21
RETREG3Q86VR2 MIR140-201ENST00000385282 100 ntBASIC1.26□□□□□ -2.21
RETREG3Q86VR2 AC244090.1-201ENST00000441884 93 ntBASIC1.26□□□□□ -2.21
RETREG3Q86VR2 SNORA25.18-201ENST00000607153 114 ntBASIC1.26□□□□□ -2.21
RETREG3Q86VR2 Y_RNA.676-201ENST00000516393 96 ntBASIC1.25□□□□□ -2.21
RETREG3Q86VR2 RNU1-29P-201ENST00000606574 126 ntBASIC1.25□□□□□ -2.21
RETREG3Q86VR2 AC243829.6-201ENST00000612652 106 ntBASIC1.25□□□□□ -2.21
RETREG3Q86VR2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
RETREG3Q86VR2 RNU7-95P-201ENST00000459222 64 ntBASIC1.24□□□□□ -2.21
RETREG3Q86VR2 Y_RNA.722-201ENST00000517279 114 ntBASIC1.24□□□□□ -2.21
RETREG3Q86VR2 ACA64.5-201ENST00000516207 127 ntBASIC1.23□□□□□ -2.21
RETREG3Q86VR2 SNORA9.1-201ENST00000362412 131 ntBASIC1.22□□□□□ -2.21
RETREG3Q86VR2 AL021921.1-201ENST00000442774 93 ntBASIC1.22□□□□□ -2.21
RETREG3Q86VR2 MIR7978-201ENST00000636158 59 ntBASIC1.22□□□□□ -2.21
RETREG3Q86VR2 Y_RNA.325-201ENST00000365171 122 ntBASIC1.21□□□□□ -2.22
RETREG3Q86VR2 TRMT112P2-201ENST00000512910 132 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms