Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RNA5SP292-201ENST00000390974 118 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 AC244090.1-201ENST00000441884 93 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 SNORD42B-201ENST00000458893 67 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 RNU6-109P-201ENST00000516364 107 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 RNU6-184P-201ENST00000516514 107 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 AC104996.3-201ENST00000590718 94 ntBASIC-0.35□□□□□ -2.46
NPHP3Q7Z494 RNA5SP331-201ENST00000364986 107 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-811P-201ENST00000384069 107 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-30P-201ENST00000384561 107 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-972P-201ENST00000391208 107 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-887P-201ENST00000410660 100 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU7-61P-201ENST00000515897 61 ntBASIC-0.36□□□□□ -2.47
NPHP3Q7Z494 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.37□□□□□ -2.47
NPHP3Q7Z494 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.37□□□□□ -2.47
NPHP3Q7Z494 RNU6-589P-201ENST00000516485 107 ntBASIC-0.37□□□□□ -2.47
NPHP3Q7Z494 AC132825.6-201ENST00000638861 357 ntBASIC-0.37□□□□□ -2.47
NPHP3Q7Z494 SNORA63.2-201ENST00000362603 126 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 SNORD90-201ENST00000391145 111 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 RNU4-32P-201ENST00000363404 141 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 MIR582-201ENST00000365731 98 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 AC026421.1-201ENST00000519101 163 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 AP000676.1-201ENST00000533307 52 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 MIR3666-201ENST00000607845 111 ntBASIC-0.38□□□□□ -2.47
NPHP3Q7Z494 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 SNORA49-201ENST00000386157 136 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 RNU6-162P-201ENST00000516228 103 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 RNU6-313P-201ENST00000516317 112 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 RNU6-479P-201ENST00000516348 105 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 SNORA18.5-201ENST00000516616 101 ntBASIC-0.39□□□□□ -2.47
NPHP3Q7Z494 RNU6-455P-201ENST00000384681 107 ntBASIC-0.4□□□□□ -2.47
NPHP3Q7Z494 AC097510.1-201ENST00000510945 133 ntBASIC-0.4□□□□□ -2.47
NPHP3Q7Z494 MIR8064-201ENST00000612863 90 ntBASIC-0.4□□□□□ -2.47
NPHP3Q7Z494 RNU6-834P-201ENST00000362367 110 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 RNA5SP300-201ENST00000391197 107 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 MIR548E-201ENST00000408287 88 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 RNU6-320P-201ENST00000516511 106 ntBASIC-0.41□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.42□□□□□ -2.48
NPHP3Q7Z494 SNORD114-4-201ENST00000363962 75 ntBASIC-0.42□□□□□ -2.48
NPHP3Q7Z494 SNORA24B-201ENST00000384176 131 ntBASIC-0.42□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.42□□□□□ -2.48
NPHP3Q7Z494 MIR4788-201ENST00000639104 80 ntBASIC-0.42□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 SNORD116-10-201ENST00000363791 102 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 RNA5SP451-201ENST00000410588 110 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 RPS29P8-201ENST00000445109 171 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 MIR4263-201ENST00000584745 83 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 AC145423.2-201ENST00000610631 239 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 AL590491.3-201ENST00000610731 82 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 U7.3-201ENST00000616123 62 ntBASIC-0.43□□□□□ -2.48
NPHP3Q7Z494 RNU6-495P-201ENST00000362995 107 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 RNA5SP275-201ENST00000363936 118 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 MIR9-2-201ENST00000384838 87 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 RNU2-51P-201ENST00000410708 197 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.44□□□□□ -2.48
NPHP3Q7Z494 RNU6-766P-201ENST00000362478 107 ntBASIC-0.45□□□□□ -2.48
NPHP3Q7Z494 AL606753.1-201ENST00000427435 87 ntBASIC-0.45□□□□□ -2.48
NPHP3Q7Z494 MIR409-201ENST00000362237 79 ntBASIC-0.46□□□□□ -2.48
NPHP3Q7Z494 SNORD115-25-201ENST00000362619 82 ntBASIC-0.46□□□□□ -2.48
NPHP3Q7Z494 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.46□□□□□ -2.48
NPHP3Q7Z494 AL603908.1-201ENST00000406098 201 ntBASIC-0.46□□□□□ -2.48
NPHP3Q7Z494 AC096531.1-201ENST00000419107 107 ntBASIC-0.46□□□□□ -2.48
NPHP3Q7Z494 MTATP6P29-201ENST00000415057 132 ntBASIC-0.47□□□□□ -2.48
NPHP3Q7Z494 MIR450A1-201ENST00000362262 91 ntBASIC-0.48□□□□□ -2.49
NPHP3Q7Z494 SNORD114-11-201ENST00000363738 75 ntBASIC-0.48□□□□□ -2.49
NPHP3Q7Z494 SNORD113-1-201ENST00000365321 69 ntBASIC-0.48□□□□□ -2.49
NPHP3Q7Z494 RNU6-990P-201ENST00000364385 104 ntBASIC-0.49□□□□□ -2.49
NPHP3Q7Z494 RNU6-900P-201ENST00000384498 102 ntBASIC-0.49□□□□□ -2.49
NPHP3Q7Z494 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.49□□□□□ -2.49
NPHP3Q7Z494 RNY4P18-201ENST00000391107 89 ntBASIC-0.49□□□□□ -2.49
NPHP3Q7Z494 snoU13.17-201ENST00000458802 104 ntBASIC-0.49□□□□□ -2.49
NPHP3Q7Z494 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 SNORA32.3-201ENST00000384772 121 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 snoU13.13-201ENST00000458842 104 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 SNORD2-201ENST00000459163 69 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 MIR4796-201ENST00000580742 81 ntBASIC-0.5□□□□□ -2.49
NPHP3Q7Z494 Y_RNA.290-201ENST00000364879 114 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 Y_RNA.544-201ENST00000384650 113 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 Y_RNA.558-201ENST00000384685 113 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 MIR224-201ENST00000384889 81 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 SNORD75.2-201ENST00000408784 58 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 MTATP8P2-201ENST00000435212 202 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 AL445193.1-201ENST00000441183 141 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 AL031737.1-201ENST00000450125 223 ntBASIC-0.51□□□□□ -2.49
NPHP3Q7Z494 RNU6-382P-201ENST00000365181 106 ntBASIC-0.52□□□□□ -2.49
NPHP3Q7Z494 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.52□□□□□ -2.49
NPHP3Q7Z494 RNU7-24P-201ENST00000458867 62 ntBASIC-0.52□□□□□ -2.49
NPHP3Q7Z494 RNU7-153P-201ENST00000516455 62 ntBASIC-0.52□□□□□ -2.49
NPHP3Q7Z494 RNA5SP66-201ENST00000517178 101 ntBASIC-0.52□□□□□ -2.49
NPHP3Q7Z494 uc_338.36-201ENST00000622331 158 ntBASIC-0.52□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms