Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 RNU7-121P-201ENST00000516604 62 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.73□□□□□ -2.69
CCDC88AQ3V6T2 SNORA33.2-201ENST00000365413 134 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 MIR548A1-201ENST00000385041 97 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 MIR4439-201ENST00000583746 80 ntBASIC-1.74□□□□□ -2.69
CCDC88AQ3V6T2 U6.96-201ENST00000636425 70 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 U6.104-201ENST00000637979 90 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-238P-201ENST00000363313 106 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 SNORD18.1-201ENST00000363807 70 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNY3P14-201ENST00000384309 102 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 AL353691.2-201ENST00000443795 59 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 SNORD4B-201ENST00000459083 72 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.75□□□□□ -2.69
CCDC88AQ3V6T2 MIR8062-201ENST00000621515 85 ntBASIC-1.76□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-228P-201ENST00000362700 106 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.53-201ENST00000362765 102 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 AL691482.2-201ENST00000457453 84 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 SNORD127-201ENST00000458892 86 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU7-134P-201ENST00000458997 64 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU4-40P-201ENST00000364351 143 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-164P-201ENST00000364604 103 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 U7.5-201ENST00000517224 61 ntBASIC-1.77□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.78□□□□□ -2.69
CCDC88AQ3V6T2 RNU6-80P-201ENST00000384195 107 ntBASIC-1.78□□□□□ -2.69
CCDC88AQ3V6T2 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 MIR889-201ENST00000401280 79 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 RNU2-38P-201ENST00000410856 79 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 MTND4P29-201ENST00000503122 1372 ntBASIC-1.79□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-774P-201ENST00000363238 107 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 MIR203A-201ENST00000384836 110 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 SNORA7.5-201ENST00000410672 110 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 SNORD63.1-201ENST00000516178 80 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 MIR3140-201ENST00000583685 90 ntBASIC-1.8□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.223-201ENST00000364290 113 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 AC018880.2-201ENST00000414265 201 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 RNU6ATAC32P-201ENST00000516026 76 ntBASIC-1.81□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.20-201ENST00000362479 113 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORD45B-201ENST00000364617 72 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORA81.3-201ENST00000517283 198 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-151P-201ENST00000364158 107 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 SNORA33.1-201ENST00000364957 130 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU4-61P-201ENST00000411243 107 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 snoU13.17-201ENST00000458802 104 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-1.82□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-990P-201ENST00000364385 104 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.512-201ENST00000384518 102 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 AC020661.2-201ENST00000560114 134 ntBASIC-1.83□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 SNORA2.1-201ENST00000363089 137 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-681P-201ENST00000364012 104 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU6-746P-201ENST00000384112 109 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR513C-201ENST00000401352 84 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR4679-2-201ENST00000578358 77 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR3139-201ENST00000579145 76 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 AC006254.2-201ENST00000603259 279 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 MIR6502-201ENST00000617296 76 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 RNU2-51P-201ENST00000410708 197 ntBASIC-1.84□□□□□ -2.7
CCDC88AQ3V6T2 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.85□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.396-201ENST00000383949 103 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 MIR3658-201ENST00000636291 56 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP292-201ENST00000390974 118 ntBASIC-1.86□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU7-197P-201ENST00000458836 62 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP147-201ENST00000516493 109 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 AP002795.1-201ENST00000534879 84 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 MIR3064-201ENST00000581130 66 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 AP001340.1-201ENST00000624405 217 ntBASIC-1.87□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-639P-201ENST00000384074 107 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.459-201ENST00000384251 102 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-644P-201ENST00000391155 98 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR4694-201ENST00000578534 80 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR3613-201ENST00000579844 87 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 AL078595.1-201ENST00000404458 226 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 MIR548Z-201ENST00000584743 97 ntBASIC-1.88□□□□□ -2.71
CCDC88AQ3V6T2 FGF7P7-201ENST00000514120 227 ntBASIC-1.89□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-1333P-201ENST00000516162 93 ntBASIC-1.89□□□□□ -2.71
CCDC88AQ3V6T2 SNORD115-27-201ENST00000364430 82 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 SNORD115-22-201ENST00000364456 82 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNU6-382P-201ENST00000365181 106 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNA5SP26-201ENST00000362406 119 ntBASIC-1.9□□□□□ -2.71
CCDC88AQ3V6T2 RNU5F-1-201ENST00000362507 117 ntBASIC-1.9□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms