Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
SF3A1Q15459 RNU6-782P-201ENST00000516852 104 ntBASIC0.19□□□□□ -2.38
SF3A1Q15459 MIR3140-201ENST00000583685 90 ntBASIC0.19□□□□□ -2.38
SF3A1Q15459 AC104408.1-201ENST00000605241 170 ntBASIC0.19□□□□□ -2.38
SF3A1Q15459 SNORD115-27-201ENST00000364430 82 ntBASIC0.18□□□□□ -2.38
SF3A1Q15459 Y_RNA.407-201ENST00000383986 113 ntBASIC0.18□□□□□ -2.38
SF3A1Q15459 Y_RNA.558-201ENST00000384685 113 ntBASIC0.18□□□□□ -2.38
SF3A1Q15459 RNU6-402P-201ENST00000410678 103 ntBASIC0.18□□□□□ -2.38
SF3A1Q15459 RNU7-153P-201ENST00000516455 62 ntBASIC0.18□□□□□ -2.38
SF3A1Q15459 SNORA42.1-201ENST00000363515 137 ntBASIC0.17□□□□□ -2.38
SF3A1Q15459 SNORD115-37-201ENST00000363768 82 ntBASIC0.17□□□□□ -2.38
SF3A1Q15459 RNU6-219P-201ENST00000364728 107 ntBASIC0.17□□□□□ -2.38
SF3A1Q15459 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.17□□□□□ -2.38
SF3A1Q15459 RNA5SP299-201ENST00000391203 116 ntBASIC0.17□□□□□ -2.38
SF3A1Q15459 MIR1295A-201ENST00000408463 79 ntBASIC0.17□□□□□ -2.38
SF3A1Q15459 RNA5SP214-201ENST00000363378 118 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 RNU6-1134P-201ENST00000365156 101 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 Y_RNA.437-201ENST00000384113 113 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 RNU6-35P-201ENST00000384530 107 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 MIR516B1-201ENST00000385211 90 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 AC084368.1-201ENST00000620935 65 ntBASIC0.16□□□□□ -2.38
SF3A1Q15459 RNU5F-1-201ENST00000362507 117 ntBASIC0.15□□□□□ -2.39
SF3A1Q15459 SNORD90-201ENST00000391145 111 ntBASIC0.15□□□□□ -2.39
SF3A1Q15459 MIR892B-201ENST00000401279 77 ntBASIC0.15□□□□□ -2.39
SF3A1Q15459 MIR5190-201ENST00000581537 80 ntBASIC0.15□□□□□ -2.39
SF3A1Q15459 MIR3925-201ENST00000584674 77 ntBASIC0.15□□□□□ -2.39
SF3A1Q15459 Y_RNA.17-201ENST00000362433 111 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 SNORD114-4-201ENST00000363962 75 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 SNORA24B-201ENST00000384176 131 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 RNU6-1177P-201ENST00000391058 104 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 SNORA75.1-201ENST00000391130 148 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 AC093729.1-201ENST00000513074 128 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 RNU6-267P-201ENST00000516714 103 ntBASIC0.14□□□□□ -2.39
SF3A1Q15459 RNU6-54P-201ENST00000365563 107 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 Y_RNA.369-201ENST00000365568 117 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 RNU6-675P-201ENST00000384236 104 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 SCARNA11.2-201ENST00000517183 154 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 MIR5582-201ENST00000579697 68 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 MIR548AE1-201ENST00000583292 70 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 MIR4743-201ENST00000584576 69 ntBASIC0.13□□□□□ -2.39
SF3A1Q15459 RNU6-497P-201ENST00000365316 104 ntBASIC0.12□□□□□ -2.39
SF3A1Q15459 RNU6-154P-201ENST00000384306 106 ntBASIC0.12□□□□□ -2.39
SF3A1Q15459 MIR329-2-201ENST00000385029 84 ntBASIC0.12□□□□□ -2.39
SF3A1Q15459 SNORD114-5-201ENST00000362928 70 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 SNORD114-9-201ENST00000364370 72 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 SNORD114-29-201ENST00000364819 70 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 MIR593-201ENST00000384856 100 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 MIR876-201ENST00000401147 81 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 AC097510.1-201ENST00000510945 133 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 Y_RNA.660-201ENST00000516002 120 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 RNA5SP170-201ENST00000517150 101 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 IGLL4P-201ENST00000614590 133 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 MIR548BB-201ENST00000626714 66 ntBASIC0.11□□□□□ -2.39
SF3A1Q15459 RNU6-495P-201ENST00000362995 107 ntBASIC0.1□□□□□ -2.39
SF3A1Q15459 RNU6-161P-201ENST00000363051 106 ntBASIC0.1□□□□□ -2.39
SF3A1Q15459 RNU6-294P-201ENST00000364999 102 ntBASIC0.1□□□□□ -2.39
SF3A1Q15459 MIR652-201ENST00000385278 98 ntBASIC0.1□□□□□ -2.39
SF3A1Q15459 snoU13.17-201ENST00000458802 104 ntBASIC0.1□□□□□ -2.39
SF3A1Q15459 MIR20A-201ENST00000362279 71 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.09□□□□□ -2.4
SF3A1Q15459 Y_RNA.593-201ENST00000410292 98 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 Y_RNA.611-201ENST00000410682 108 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 RNU7-24P-201ENST00000458867 62 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 RNA5SP476-201ENST00000516613 103 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 MIR6759-201ENST00000638110 65 ntBASIC0.09□□□□□ -2.4
SF3A1Q15459 RNU6-1298P-201ENST00000362456 101 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 RNY1P1-201ENST00000364372 112 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 AL450471.1-201ENST00000447509 127 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 SNORD42B-201ENST00000458893 67 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 SCARNA17.3-201ENST00000516381 125 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 RNU7-188P-201ENST00000517063 64 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 AC006254.2-201ENST00000603259 279 ntBASIC0.08□□□□□ -2.4
SF3A1Q15459 MIR145-201ENST00000384967 88 ntBASIC0.07□□□□□ -2.4
SF3A1Q15459 SNORD75.2-201ENST00000408784 58 ntBASIC0.07□□□□□ -2.4
SF3A1Q15459 MIR548H2-201ENST00000408874 88 ntBASIC0.07□□□□□ -2.4
SF3A1Q15459 RNU6-762P-201ENST00000517107 102 ntBASIC0.07□□□□□ -2.4
SF3A1Q15459 AC140658.3-201ENST00000567603 271 ntBASIC0.07□□□□□ -2.4
SF3A1Q15459 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.06□□□□□ -2.4
SF3A1Q15459 AC244090.1-201ENST00000441884 93 ntBASIC0.06□□□□□ -2.4
SF3A1Q15459 RNU6ATAC22P-201ENST00000516794 89 ntBASIC0.06□□□□□ -2.4
SF3A1Q15459 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.06□□□□□ -2.4
SF3A1Q15459 RNU6-208P-201ENST00000362431 107 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 RNU6-624P-201ENST00000363411 107 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 Y_RNA.264-201ENST00000364665 102 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 SNORD77.2-201ENST00000391045 68 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 RNA5SP163-201ENST00000410304 99 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 RNU6-180P-201ENST00000516697 61 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 AC006160.2-201ENST00000637708 154 ntBASIC0.05□□□□□ -2.4
SF3A1Q15459 MIR450A2-201ENST00000385022 100 ntBASIC0.04□□□□□ -2.4
SF3A1Q15459 RNU6-592P-201ENST00000411333 103 ntBASIC0.04□□□□□ -2.4
SF3A1Q15459 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
SF3A1Q15459 RN7SL660P-201ENST00000614852 299 ntBASIC0.04□□□□□ -2.4
SF3A1Q15459 RNU6-824P-201ENST00000363724 104 ntBASIC0.03□□□□□ -2.4
SF3A1Q15459 RNU6-382P-201ENST00000365181 106 ntBASIC0.03□□□□□ -2.4
SF3A1Q15459 Y_RNA.426-201ENST00000384068 113 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 Y_RNA.606-201ENST00000410579 103 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 RNU7-165P-201ENST00000458864 60 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 RNU7-159P-201ENST00000459284 62 ntBASIC0.02□□□□□ -2.41
SF3A1Q15459 CR383656.4-201ENST00000546909 122 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 199 ms