Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 MIR4452-201ENST00000583004 71 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 MIR7110-201ENST00000612638 86 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 RNU6-838P-201ENST00000363399 108 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 SNORD12-201ENST00000391002 90 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 MIR548E-201ENST00000408287 88 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 RNU6-469P-201ENST00000516253 101 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 CYP3A54P-201ENST00000566950 75 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 MIR502-201ENST00000606349 86 ntBASIC1.78□□□□□ -2.12
FOXC1Q12948 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
FOXC1Q12948 MIR545-201ENST00000385085 106 ntBASIC1.77□□□□□ -2.13
FOXC1Q12948 SNORA40B-201ENST00000385573 128 ntBASIC1.77□□□□□ -2.13
FOXC1Q12948 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.77□□□□□ -2.13
FOXC1Q12948 MIR6840-201ENST00000611937 71 ntBASIC1.77□□□□□ -2.13
FOXC1Q12948 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.77□□□□□ -2.13
FOXC1Q12948 Y_RNA.282-201ENST00000364793 102 ntBASIC1.76□□□□□ -2.13
FOXC1Q12948 Y_RNA.374-201ENST00000365606 101 ntBASIC1.76□□□□□ -2.13
FOXC1Q12948 Y_RNA.407-201ENST00000383986 113 ntBASIC1.76□□□□□ -2.13
FOXC1Q12948 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.76□□□□□ -2.13
FOXC1Q12948 MIR4422-201ENST00000581938 83 ntBASIC1.76□□□□□ -2.13
FOXC1Q12948 MIRLET7G-201ENST00000362280 84 ntBASIC1.75□□□□□ -2.13
FOXC1Q12948 RNU6-392P-201ENST00000364926 101 ntBASIC1.75□□□□□ -2.13
FOXC1Q12948 AL021921.1-201ENST00000442774 93 ntBASIC1.75□□□□□ -2.13
FOXC1Q12948 SCARNA16.5-201ENST00000517114 183 ntBASIC1.75□□□□□ -2.13
FOXC1Q12948 MIR548AE1-201ENST00000583292 70 ntBASIC1.75□□□□□ -2.13
FOXC1Q12948 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXC1Q12948 U7.7-201ENST00000459276 60 ntBASIC1.74□□□□□ -2.13
FOXC1Q12948 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.74□□□□□ -2.13
FOXC1Q12948 AC090617.8-201ENST00000623339 167 ntBASIC1.74□□□□□ -2.13
FOXC1Q12948 MIR6828-201ENST00000636181 60 ntBASIC1.74□□□□□ -2.13
FOXC1Q12948 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.74□□□□□ -2.13
FOXC1Q12948 AL356379.1-201ENST00000414105 126 ntBASIC1.73□□□□□ -2.13
FOXC1Q12948 RNU1-92P-201ENST00000517017 135 ntBASIC1.73□□□□□ -2.13
FOXC1Q12948 SNORA70.22-201ENST00000517160 124 ntBASIC1.73□□□□□ -2.13
FOXC1Q12948 MIR3678-201ENST00000578455 94 ntBASIC1.73□□□□□ -2.13
FOXC1Q12948 RNU4-52P-201ENST00000384209 138 ntBASIC1.72□□□□□ -2.13
FOXC1Q12948 HMGN2P38-201ENST00000423806 265 ntBASIC1.72□□□□□ -2.13
FOXC1Q12948 AC002429.1-201ENST00000437672 148 ntBASIC1.72□□□□□ -2.13
FOXC1Q12948 RNU6-1110P-201ENST00000516462 101 ntBASIC1.72□□□□□ -2.13
FOXC1Q12948 RNU6-810P-201ENST00000364001 107 ntBASIC1.71□□□□□ -2.14
FOXC1Q12948 RNA5SP102-201ENST00000516865 106 ntBASIC1.71□□□□□ -2.14
FOXC1Q12948 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXC1Q12948 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXC1Q12948 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
FOXC1Q12948 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.7□□□□□ -2.14
FOXC1Q12948 MIR516B1-201ENST00000385211 90 ntBASIC1.7□□□□□ -2.14
FOXC1Q12948 SNORD105-201ENST00000386910 85 ntBASIC1.7□□□□□ -2.14
FOXC1Q12948 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
FOXC1Q12948 AC008834.1-201ENST00000511612 175 ntBASIC1.7□□□□□ -2.14
FOXC1Q12948 MIR6515-201ENST00000619843 57 ntBASIC1.7□□□□□ -2.14
FOXC1Q12948 RNU6-518P-201ENST00000516056 96 ntBASIC1.69□□□□□ -2.14
FOXC1Q12948 MIR5002-201ENST00000584713 97 ntBASIC1.69□□□□□ -2.14
FOXC1Q12948 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.69□□□□□ -2.14
FOXC1Q12948 AC243829.3-201ENST00000622177 108 ntBASIC1.69□□□□□ -2.14
FOXC1Q12948 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
FOXC1Q12948 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
FOXC1Q12948 MIR519A2-201ENST00000384990 87 ntBASIC1.68□□□□□ -2.14
FOXC1Q12948 RNA5SP233-201ENST00000459153 113 ntBASIC1.68□□□□□ -2.14
FOXC1Q12948 RNU6-419P-201ENST00000517030 63 ntBASIC1.68□□□□□ -2.14
FOXC1Q12948 SNORD53B-201ENST00000577887 78 ntBASIC1.68□□□□□ -2.14
FOXC1Q12948 SNORD1B-201ENST00000363091 84 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 RNU1-42P-201ENST00000364033 160 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 SNORD114-22-201ENST00000365423 72 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 MIR527-201ENST00000385244 85 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 MIR548AG1-201ENST00000579932 66 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 MIR4490-201ENST00000582647 84 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 U6.96-201ENST00000636425 70 ntBASIC1.67□□□□□ -2.14
FOXC1Q12948 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
FOXC1Q12948 RNU6-246P-201ENST00000384702 107 ntBASIC1.66□□□□□ -2.14
FOXC1Q12948 SNORD89-201ENST00000390981 114 ntBASIC1.66□□□□□ -2.14
FOXC1Q12948 RNU6-1250P-201ENST00000391218 107 ntBASIC1.66□□□□□ -2.14
FOXC1Q12948 HMGN2P19-201ENST00000425149 265 ntBASIC1.66□□□□□ -2.14
FOXC1Q12948 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.66□□□□□ -2.14
FOXC1Q12948 RNA5SP160-201ENST00000364866 120 ntBASIC1.65□□□□□ -2.15
FOXC1Q12948 MIR573-201ENST00000384964 99 ntBASIC1.65□□□□□ -2.15
FOXC1Q12948 MIR4285-201ENST00000581001 85 ntBASIC1.65□□□□□ -2.15
FOXC1Q12948 AL096840.1-201ENST00000603287 93 ntBASIC1.65□□□□□ -2.15
FOXC1Q12948 RNA5SP37-201ENST00000365420 130 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 RNU6-172P-201ENST00000411000 93 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 MIR3612-201ENST00000579753 87 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 MIR4473-201ENST00000583731 91 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 MIR4448-201ENST00000584360 86 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.64□□□□□ -2.15
FOXC1Q12948 AP000553.5-201ENST00000641933 54 ntBASIC1.64□□□□□ -2.15
FOXC1Q12948 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC1.64□□□□□ -2.15
FOXC1Q12948 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
FOXC1Q12948 MIR1255B2-201ENST00000408618 67 ntBASIC1.63□□□□□ -2.15
FOXC1Q12948 AC243829.6-201ENST00000612652 106 ntBASIC1.63□□□□□ -2.15
FOXC1Q12948 RNU6-247P-201ENST00000362636 107 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 Y_RNA.178-201ENST00000363832 102 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 AC006210.1-201ENST00000424882 111 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 AC104435.1-201ENST00000483483 166 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 RNA5SP364-201ENST00000516938 78 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 MIR4255-201ENST00000579351 72 ntBASIC1.62□□□□□ -2.15
FOXC1Q12948 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.61□□□□□ -2.15
FOXC1Q12948 SNORA36.1-201ENST00000363424 132 ntBASIC1.61□□□□□ -2.15
FOXC1Q12948 SNORA16.1-201ENST00000364597 132 ntBASIC1.61□□□□□ -2.15
FOXC1Q12948 MIR676-201ENST00000390702 67 ntBASIC1.61□□□□□ -2.15
FOXC1Q12948 SNORD110-201ENST00000408189 75 ntBASIC1.61□□□□□ -2.15
FOXC1Q12948 AC022709.1-201ENST00000615967 87 ntBASIC1.61□□□□□ -2.15
FOXC1Q12948 Y_RNA.109-201ENST00000363215 102 ntBASIC1.6□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms