Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR3612-201ENST00000579753 87 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 MIR519E-201ENST00000385075 84 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 MIR154-201ENST00000385243 84 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 MIR618-201ENST00000385287 98 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 SNORD99-201ENST00000408612 74 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 RNU6-871P-201ENST00000516122 100 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
COL4A3Q01955 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
COL4A3Q01955 RNU6-726P-201ENST00000364680 107 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 RNU6-1335P-201ENST00000365426 107 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 RNU6-154P-201ENST00000384306 106 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 MIR573-201ENST00000384964 99 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 SNORD41.1-201ENST00000391000 69 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 MIR4711-201ENST00000578274 70 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 MIR4773-1-201ENST00000637203 78 ntBASIC0.92□□□□□ -2.26
COL4A3Q01955 SNORD18A-201ENST00000363753 72 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNA5SP193-201ENST00000410353 107 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNU6-274P-201ENST00000459566 107 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 AC114801.3-201ENST00000510231 177 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNA5SP285-201ENST00000516619 119 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNA5SP47-201ENST00000517230 109 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 U6.81-201ENST00000612550 106 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNU6-788P-201ENST00000390967 104 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 AL691482.2-201ENST00000457453 84 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 snoU13.19-201ENST00000459148 104 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.91□□□□□ -2.26
COL4A3Q01955 AC011195.1-201ENST00000578177 177 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 MIR6759-201ENST00000638110 65 ntBASIC0.91□□□□□ -2.26
COL4A3Q01955 RNU6-495P-201ENST00000362995 107 ntBASIC0.9□□□□□ -2.27
COL4A3Q01955 RNU6-382P-201ENST00000365181 106 ntBASIC0.9□□□□□ -2.27
COL4A3Q01955 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
COL4A3Q01955 MIR548O2-201ENST00000616090 70 ntBASIC0.9□□□□□ -2.27
COL4A3Q01955 SNORD45.1-201ENST00000363181 77 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 RNU6-1241P-201ENST00000384536 107 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 RNU7-24P-201ENST00000458867 62 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 RNU6-634P-201ENST00000459134 106 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 MIR5589-201ENST00000579442 60 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.89□□□□□ -2.27
COL4A3Q01955 RNU6-955P-201ENST00000410497 104 ntBASIC0.88□□□□□ -2.27
COL4A3Q01955 AC244098.3-201ENST00000424803 96 ntBASIC0.88□□□□□ -2.27
COL4A3Q01955 AC093423.1-201ENST00000440817 142 ntBASIC0.88□□□□□ -2.27
COL4A3Q01955 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.88□□□□□ -2.27
COL4A3Q01955 MIR18A-201ENST00000362310 71 ntBASIC0.87□□□□□ -2.27
COL4A3Q01955 MIR8053-201ENST00000613344 75 ntBASIC0.87□□□□□ -2.27
COL4A3Q01955 RNU6V-201ENST00000384105 107 ntBASIC0.86□□□□□ -2.27
COL4A3Q01955 SNORD75.2-201ENST00000408784 58 ntBASIC0.86□□□□□ -2.27
COL4A3Q01955 MIR6509-201ENST00000614603 85 ntBASIC0.86□□□□□ -2.27
COL4A3Q01955 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.86□□□□□ -2.27
COL4A3Q01955 SNORD115-22-201ENST00000364456 82 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 RNU1-141P-201ENST00000364623 158 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 RNU6-590P-201ENST00000365039 107 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 RNU6-939P-201ENST00000384634 107 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 RNU6-269P-201ENST00000391077 97 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 RNU6-752P-201ENST00000516376 102 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 SCARNA16.5-201ENST00000517114 183 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 NAMPTP3-201ENST00000569273 224 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 MIR4460-201ENST00000577862 86 ntBASIC0.85□□□□□ -2.27
COL4A3Q01955 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
COL4A3Q01955 SNORA2A-201ENST00000383885 135 ntBASIC0.84□□□□□ -2.27
COL4A3Q01955 SNORA8.2-201ENST00000384372 139 ntBASIC0.84□□□□□ -2.27
COL4A3Q01955 MT-TY-201ENST00000387409 66 ntBASIC0.84□□□□□ -2.27
COL4A3Q01955 SNORD30.1-201ENST00000391309 70 ntBASIC0.84□□□□□ -2.27
COL4A3Q01955 RNU4-45P-201ENST00000365469 141 ntBASIC0.84□□□□□ -2.28
COL4A3Q01955 RNU6-649P-201ENST00000384463 107 ntBASIC0.84□□□□□ -2.28
COL4A3Q01955 RNU6-540P-201ENST00000384622 101 ntBASIC0.84□□□□□ -2.28
COL4A3Q01955 MIR6828-201ENST00000636181 60 ntBASIC0.84□□□□□ -2.28
COL4A3Q01955 RNU6-1039P-201ENST00000383931 107 ntBASIC0.83□□□□□ -2.28
COL4A3Q01955 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.83□□□□□ -2.28
COL4A3Q01955 RNU6-539P-201ENST00000516665 103 ntBASIC0.83□□□□□ -2.28
COL4A3Q01955 MIR4653-201ENST00000585107 83 ntBASIC0.83□□□□□ -2.28
COL4A3Q01955 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.82□□□□□ -2.28
COL4A3Q01955 SNORD115-31-201ENST00000365318 82 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 RNU6-54P-201ENST00000365563 107 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 RNU6-260P-201ENST00000384092 107 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 MIR203A-201ENST00000384836 110 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 RNA5SP222-201ENST00000411039 105 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 AL162376.1-201ENST00000624117 175 ntBASIC0.82□□□□□ -2.28
COL4A3Q01955 SNORD114-4-201ENST00000363962 75 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 SNORD114-15-201ENST00000364687 72 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 RNU6-663P-201ENST00000391105 106 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 RNU5B-6P-201ENST00000516765 68 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 MIR4661-201ENST00000582720 75 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 SNORA36.1-201ENST00000363424 132 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 RNA5SP499-201ENST00000363982 119 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 RNA5SP63-201ENST00000391225 112 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 SNORD42B-201ENST00000458893 67 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 RNA5SP227-201ENST00000516184 113 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 AL353765.1-201ENST00000605514 183 ntBASIC0.81□□□□□ -2.28
COL4A3Q01955 MIR409-201ENST00000362237 79 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 SNORD113.1-201ENST00000363280 73 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 RNU6-895P-201ENST00000384125 103 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 Z95118.1-201ENST00000421372 247 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.8□□□□□ -2.28
COL4A3Q01955 RNA5SP268-201ENST00000516828 124 ntBASIC0.8□□□□□ -2.28
COL4A3Q01955 SNORD45A-201ENST00000384512 84 ntBASIC0.79□□□□□ -2.28
COL4A3Q01955 RNU6-30P-201ENST00000384561 107 ntBASIC0.79□□□□□ -2.28
COL4A3Q01955 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.79□□□□□ -2.28
COL4A3Q01955 AC069503.3-201ENST00000618674 145 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 209.5 ms