Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 Y_RNA.606-201ENST00000410579 103 ntBASIC0.46□□□□□ -2.34
LMO4P61968 RNU4-54P-201ENST00000516428 129 ntBASIC0.46□□□□□ -2.34
LMO4P61968 RNU6-303P-201ENST00000517091 106 ntBASIC0.46□□□□□ -2.34
LMO4P61968 YWHAEP2-201ENST00000580066 112 ntBASIC0.46□□□□□ -2.34
LMO4P61968 YWHAEP3-201ENST00000582767 121 ntBASIC0.46□□□□□ -2.34
LMO4P61968 RNU1-29P-201ENST00000606574 126 ntBASIC0.46□□□□□ -2.34
LMO4P61968 AC092634.7-201ENST00000621022 103 ntBASIC0.46□□□□□ -2.34
LMO4P61968 RNU6-382P-201ENST00000365181 106 ntBASIC0.45□□□□□ -2.34
LMO4P61968 RNU6-945P-201ENST00000383947 107 ntBASIC0.45□□□□□ -2.34
LMO4P61968 MT-TY-201ENST00000387409 66 ntBASIC0.45□□□□□ -2.34
LMO4P61968 MIR889-201ENST00000401280 79 ntBASIC0.45□□□□□ -2.34
LMO4P61968 RNU6-380P-201ENST00000410207 107 ntBASIC0.45□□□□□ -2.34
LMO4P61968 AC074348.1-201ENST00000426503 132 ntBASIC0.45□□□□□ -2.34
LMO4P61968 AC069271.1-201ENST00000445577 156 ntBASIC0.45□□□□□ -2.34
LMO4P61968 AC018659.1-201ENST00000551083 169 ntBASIC0.45□□□□□ -2.34
LMO4P61968 NAMPTP3-201ENST00000569273 224 ntBASIC0.45□□□□□ -2.34
LMO4P61968 MIR4460-201ENST00000577862 86 ntBASIC0.45□□□□□ -2.34
LMO4P61968 AC145423.2-201ENST00000610631 239 ntBASIC0.45□□□□□ -2.34
LMO4P61968 SNORA70.25-201ENST00000612741 95 ntBASIC0.45□□□□□ -2.34
LMO4P61968 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.45□□□□□ -2.34
LMO4P61968 MIR6779-201ENST00000617283 64 ntBASIC0.45□□□□□ -2.34
LMO4P61968 MIR4773-1-201ENST00000637203 78 ntBASIC0.45□□□□□ -2.34
LMO4P61968 RNU6-154P-201ENST00000384306 106 ntBASIC0.44□□□□□ -2.34
LMO4P61968 MIR92A1-201ENST00000385233 78 ntBASIC0.44□□□□□ -2.34
LMO4P61968 SNORD75.2-201ENST00000408784 58 ntBASIC0.44□□□□□ -2.34
LMO4P61968 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.44□□□□□ -2.34
LMO4P61968 AC243829.3-201ENST00000622177 108 ntBASIC0.44□□□□□ -2.34
LMO4P61968 RNU6-495P-201ENST00000362995 107 ntBASIC0.43□□□□□ -2.34
LMO4P61968 RNU6-330P-201ENST00000363015 107 ntBASIC0.43□□□□□ -2.34
LMO4P61968 SNORA40.8-201ENST00000411034 126 ntBASIC0.43□□□□□ -2.34
LMO4P61968 SNORD42B-201ENST00000458893 67 ntBASIC0.43□□□□□ -2.34
LMO4P61968 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.43□□□□□ -2.34
LMO4P61968 RNU6-229P-201ENST00000516614 102 ntBASIC0.43□□□□□ -2.34
LMO4P61968 RNU6-807P-201ENST00000516805 107 ntBASIC0.43□□□□□ -2.34
LMO4P61968 MIR1297-201ENST00000637311 77 ntBASIC0.43□□□□□ -2.34
LMO4P61968 AC073869.9-201ENST00000641610 120 ntBASIC0.43□□□□□ -2.34
LMO4P61968 SNORD114-23-201ENST00000363536 72 ntBASIC0.42□□□□□ -2.34
LMO4P61968 SNORD118-201ENST00000363593 134 ntBASIC0.42□□□□□ -2.34
LMO4P61968 Y_RNA.205-201ENST00000364128 113 ntBASIC0.42□□□□□ -2.34
LMO4P61968 RNU6-776P-201ENST00000364403 104 ntBASIC0.42□□□□□ -2.34
LMO4P61968 RNU6-1022P-201ENST00000365049 104 ntBASIC0.42□□□□□ -2.34
LMO4P61968 AC006210.1-201ENST00000424882 111 ntBASIC0.42□□□□□ -2.34
LMO4P61968 RNU5B-6P-201ENST00000516765 68 ntBASIC0.42□□□□□ -2.34
LMO4P61968 MIR3134-201ENST00000579433 74 ntBASIC0.42□□□□□ -2.34
LMO4P61968 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.42□□□□□ -2.34
LMO4P61968 AC069503.3-201ENST00000618674 145 ntBASIC0.42□□□□□ -2.34
LMO4P61968 MIR664A-201ENST00000626086 82 ntBASIC0.42□□□□□ -2.34
LMO4P61968 RNU6-681P-201ENST00000364012 104 ntBASIC0.41□□□□□ -2.34
LMO4P61968 SNORA8.1-201ENST00000384250 140 ntBASIC0.41□□□□□ -2.34
LMO4P61968 MIR518A1-201ENST00000385068 85 ntBASIC0.41□□□□□ -2.34
LMO4P61968 SNORD110-201ENST00000408189 75 ntBASIC0.41□□□□□ -2.34
LMO4P61968 SNORD71-201ENST00000411292 86 ntBASIC0.41□□□□□ -2.34
LMO4P61968 RNU7-24P-201ENST00000458867 62 ntBASIC0.41□□□□□ -2.34
LMO4P61968 RNU6-274P-201ENST00000459566 107 ntBASIC0.41□□□□□ -2.34
LMO4P61968 RNU6-1232P-201ENST00000516299 86 ntBASIC0.41□□□□□ -2.34
LMO4P61968 MIR548AE1-201ENST00000583292 70 ntBASIC0.41□□□□□ -2.34
LMO4P61968 U7.4-201ENST00000614961 63 ntBASIC0.41□□□□□ -2.34
LMO4P61968 MIR4662A-201ENST00000637499 67 ntBASIC0.41□□□□□ -2.34
LMO4P61968 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.35
LMO4P61968 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
LMO4P61968 MIR4473-201ENST00000583731 91 ntBASIC0.4□□□□□ -2.35
LMO4P61968 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.4□□□□□ -2.35
LMO4P61968 MIR6755-201ENST00000619993 66 ntBASIC0.4□□□□□ -2.35
LMO4P61968 AC010487.4-201ENST00000637027 61 ntBASIC0.4□□□□□ -2.35
LMO4P61968 RNU6-1296P-201ENST00000383879 107 ntBASIC0.39□□□□□ -2.35
LMO4P61968 Y_RNA.423-201ENST00000384057 113 ntBASIC0.39□□□□□ -2.35
LMO4P61968 MIR5087-201ENST00000635826 76 ntBASIC0.39□□□□□ -2.35
LMO4P61968 RNU6-1039P-201ENST00000383931 107 ntBASIC0.38□□□□□ -2.35
LMO4P61968 MIR193B-201ENST00000384907 83 ntBASIC0.38□□□□□ -2.35
LMO4P61968 HMGN2P22-201ENST00000427588 175 ntBASIC0.38□□□□□ -2.35
LMO4P61968 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
LMO4P61968 RNU6-752P-201ENST00000516376 102 ntBASIC0.38□□□□□ -2.35
LMO4P61968 RNU6-70P-201ENST00000516438 60 ntBASIC0.38□□□□□ -2.35
LMO4P61968 SNORA40.17-201ENST00000517256 115 ntBASIC0.38□□□□□ -2.35
LMO4P61968 RNU6-990P-201ENST00000364385 104 ntBASIC0.37□□□□□ -2.35
LMO4P61968 Y_RNA.407-201ENST00000383986 113 ntBASIC0.37□□□□□ -2.35
LMO4P61968 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
LMO4P61968 AL157398.1-201ENST00000452981 186 ntBASIC0.37□□□□□ -2.35
LMO4P61968 AL691482.2-201ENST00000457453 84 ntBASIC0.37□□□□□ -2.35
LMO4P61968 RNU6-523P-201ENST00000516304 54 ntBASIC0.37□□□□□ -2.35
LMO4P61968 Y_RNA.681-201ENST00000516445 113 ntBASIC0.37□□□□□ -2.35
LMO4P61968 AC243829.6-201ENST00000612652 106 ntBASIC0.37□□□□□ -2.35
LMO4P61968 uc_338.17-201ENST00000619633 179 ntBASIC0.37□□□□□ -2.35
LMO4P61968 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
LMO4P61968 RNU6-411P-201ENST00000384451 107 ntBASIC0.36□□□□□ -2.35
LMO4P61968 Y_RNA.565-201ENST00000384719 101 ntBASIC0.36□□□□□ -2.35
LMO4P61968 MIR203A-201ENST00000384836 110 ntBASIC0.36□□□□□ -2.35
LMO4P61968 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
LMO4P61968 MIR1273G-201ENST00000577677 100 ntBASIC0.36□□□□□ -2.35
LMO4P61968 MIR5706-201ENST00000579841 80 ntBASIC0.36□□□□□ -2.35
LMO4P61968 MIR3675-201ENST00000583661 73 ntBASIC0.36□□□□□ -2.35
LMO4P61968 MIR6509-201ENST00000614603 85 ntBASIC0.36□□□□□ -2.35
LMO4P61968 MIR103A1-201ENST00000362165 78 ntBASIC0.35□□□□□ -2.35
LMO4P61968 SNORA2A-201ENST00000383885 135 ntBASIC0.35□□□□□ -2.35
LMO4P61968 Y_RNA.545-201ENST00000384652 105 ntBASIC0.35□□□□□ -2.35
LMO4P61968 MIR652-201ENST00000385278 98 ntBASIC0.35□□□□□ -2.35
LMO4P61968 RNU6-687P-201ENST00000516443 89 ntBASIC0.35□□□□□ -2.35
LMO4P61968 RNU6-1015P-201ENST00000517121 99 ntBASIC0.35□□□□□ -2.35
LMO4P61968 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
LMO4P61968 SNORD44.1-201ENST00000363202 61 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms