Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MTND4LP9-201ENST00000427694 174 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 MTND5P41-201ENST00000517498 206 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 AC068339.1-201ENST00000526965 141 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 RNU6-495P-201ENST00000362995 107 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 RNU6-132P-201ENST00000383863 107 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 SNORD83B-201ENST00000386745 93 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 AL035470.1-201ENST00000622571 220 ntBASIC-0.96□□□□□ -2.56
MSH6P52701 SNORA63.2-201ENST00000362603 126 ntBASIC-0.97□□□□□ -2.57
MSH6P52701 RNU6-881P-201ENST00000516813 102 ntBASIC-0.97□□□□□ -2.57
MSH6P52701 MIR5704-201ENST00000584029 77 ntBASIC-0.97□□□□□ -2.57
MSH6P52701 MIR6854-201ENST00000614935 69 ntBASIC-0.97□□□□□ -2.57
MSH6P52701 SNORD74.6-201ENST00000364796 70 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 RNU6-886P-201ENST00000384319 105 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 RNU6-644P-201ENST00000391155 98 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 RNU6-721P-201ENST00000410155 105 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 MIR3179-1-201ENST00000578940 84 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 MIR3179-2-201ENST00000579107 84 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 MIR3179-3-201ENST00000579566 84 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 MIR3179-4-201ENST00000617599 84 ntBASIC-0.98□□□□□ -2.57
MSH6P52701 AL157777.2-201ENST00000258070 137 ntBASIC-0.99□□□□□ -2.57
MSH6P52701 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.99□□□□□ -2.57
MSH6P52701 RNU6-772P-201ENST00000516042 105 ntBASIC-0.99□□□□□ -2.57
MSH6P52701 MIR6773-201ENST00000612812 74 ntBASIC-0.99□□□□□ -2.57
MSH6P52701 SNORD45B-201ENST00000364617 72 ntBASIC-1□□□□□ -2.57
MSH6P52701 Y_RNA.555-201ENST00000384673 110 ntBASIC-1□□□□□ -2.57
MSH6P52701 MIR548U-201ENST00000390728 81 ntBASIC-1□□□□□ -2.57
MSH6P52701 RNU6-337P-201ENST00000391243 106 ntBASIC-1□□□□□ -2.57
MSH6P52701 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1□□□□□ -2.57
MSH6P52701 MIR3064-201ENST00000581130 66 ntBASIC-1□□□□□ -2.57
MSH6P52701 MIR3140-201ENST00000583685 90 ntBASIC-1□□□□□ -2.57
MSH6P52701 AC099654.10-201ENST00000640395 161 ntBASIC-1□□□□□ -2.57
MSH6P52701 RNU6-813P-201ENST00000384691 107 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 SNORA40-201ENST00000388090 126 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 SNORD4B-201ENST00000459083 72 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 SNORD22.1-201ENST00000516331 125 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 MIR8068-201ENST00000618032 68 ntBASIC-1.01□□□□□ -2.57
MSH6P52701 Y_RNA.95-201ENST00000363079 95 ntBASIC-1.02□□□□□ -2.57
MSH6P52701 SNORA24B-201ENST00000384176 131 ntBASIC-1.02□□□□□ -2.57
MSH6P52701 MIR5009-201ENST00000578736 100 ntBASIC-1.02□□□□□ -2.57
MSH6P52701 AC103810.7-201ENST00000607821 91 ntBASIC-1.02□□□□□ -2.57
MSH6P52701 MIR365A-201ENST00000362260 87 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 SNORA63.6-201ENST00000364921 119 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 MIRLET7B-201ENST00000385140 83 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 RNU6-592P-201ENST00000411333 103 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 RNU7-24P-201ENST00000458867 62 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 Y_RNA.649-201ENST00000459077 103 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 snoR1.1-201ENST00000628177 80 ntBASIC-1.03□□□□□ -2.57
MSH6P52701 SNORD114-25-201ENST00000363742 72 ntBASIC-1.04□□□□□ -2.58
MSH6P52701 RNU4-36P-201ENST00000364294 144 ntBASIC-1.04□□□□□ -2.58
MSH6P52701 SNORD115-23-201ENST00000364461 82 ntBASIC-1.04□□□□□ -2.58
MSH6P52701 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.04□□□□□ -2.58
MSH6P52701 AC104996.3-201ENST00000590718 94 ntBASIC-1.04□□□□□ -2.58
MSH6P52701 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 Y_RNA.467-201ENST00000384297 102 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 RNU6-257P-201ENST00000410238 98 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 RNU7-200P-201ENST00000516105 62 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 RNA5SP461-201ENST00000516451 104 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 MIR3165-201ENST00000579874 75 ntBASIC-1.05□□□□□ -2.58
MSH6P52701 RNA5SP192-201ENST00000364404 120 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 RNU7-107P-201ENST00000459121 61 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 RNU6-1211P-201ENST00000459179 105 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 AC022137.1-201ENST00000483735 151 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 MIR548Z-201ENST00000584743 97 ntBASIC-1.06□□□□□ -2.58
MSH6P52701 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.07□□□□□ -2.58
MSH6P52701 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.07□□□□□ -2.58
MSH6P52701 Y_RNA.563-201ENST00000384707 108 ntBASIC-1.07□□□□□ -2.58
MSH6P52701 RNU6-62P-201ENST00000516526 102 ntBASIC-1.07□□□□□ -2.58
MSH6P52701 MIR3115-201ENST00000577915 68 ntBASIC-1.07□□□□□ -2.58
MSH6P52701 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 SNORD75.2-201ENST00000408784 58 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 AP000533.3-201ENST00000447704 118 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 YWHAEP3-201ENST00000582767 121 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 MIR4777-201ENST00000583710 86 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 MIR3914-2-201ENST00000637339 95 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 RNU6-990P-201ENST00000364385 104 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 Y_RNA.525-201ENST00000384570 113 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 RNU6-519P-201ENST00000410590 108 ntBASIC-1.08□□□□□ -2.58
MSH6P52701 MIR548A1-201ENST00000385041 97 ntBASIC-1.09□□□□□ -2.58
MSH6P52701 MIR517B-201ENST00000385102 67 ntBASIC-1.09□□□□□ -2.58
MSH6P52701 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.09□□□□□ -2.58
MSH6P52701 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.09□□□□□ -2.58
MSH6P52701 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 RNU6-905P-201ENST00000384434 107 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 RNU6-24P-201ENST00000384440 107 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 RNA5SP292-201ENST00000390974 118 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 AL500527.2-201ENST00000454105 95 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 RNA5SP470-201ENST00000516463 106 ntBASIC-1.1□□□□□ -2.59
MSH6P52701 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.1□□□□□ -2.59
MSH6P52701 SNORA18.5-201ENST00000516616 101 ntBASIC-1.11□□□□□ -2.59
MSH6P52701 SNORA62.4-201ENST00000365504 151 ntBASIC-1.12□□□□□ -2.59
MSH6P52701 RNU6-80P-201ENST00000384195 107 ntBASIC-1.12□□□□□ -2.59
MSH6P52701 MTATP6P29-201ENST00000415057 132 ntBASIC-1.12□□□□□ -2.59
MSH6P52701 AC021146.9-201ENST00000512503 156 ntBASIC-1.12□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 215.2 ms