Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-838P-201ENST00000363399 108 ntBASIC2□□□□□ -2.09
COL9A1P20849 AC079804.2-201ENST00000490376 200 ntBASIC2□□□□□ -2.09
COL9A1P20849 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
COL9A1P20849 AC021146.9-201ENST00000512503 156 ntBASIC1.99□□□□□ -2.09
COL9A1P20849 U2.7-201ENST00000619197 100 ntBASIC1.99□□□□□ -2.09
COL9A1P20849 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.98□□□□□ -2.09
COL9A1P20849 AC104435.1-201ENST00000483483 166 ntBASIC1.98□□□□□ -2.09
COL9A1P20849 RNU6-1110P-201ENST00000516462 101 ntBASIC1.98□□□□□ -2.09
COL9A1P20849 RNA5SP47-201ENST00000517230 109 ntBASIC1.98□□□□□ -2.09
COL9A1P20849 AL627230.5-201ENST00000619807 58 ntBASIC1.98□□□□□ -2.09
COL9A1P20849 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC1.98□□□□□ -2.09
COL9A1P20849 RNU7-119P-201ENST00000459279 63 ntBASIC1.97□□□□□ -2.09
COL9A1P20849 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
COL9A1P20849 MIR96-201ENST00000362288 78 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 RNA5SP457-201ENST00000363657 124 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 SNORD18A-201ENST00000363753 72 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 MIR144-201ENST00000384886 86 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 MIR758-201ENST00000390227 88 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 RPS29P1-201ENST00000465274 159 ntBASIC1.96□□□□□ -2.1
COL9A1P20849 MIRLET7G-201ENST00000362280 84 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 snoU13.13-201ENST00000458842 104 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 Y_RNA.633-201ENST00000459107 95 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 RNU5B-6P-201ENST00000516765 68 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 MIR151B-201ENST00000584249 96 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.95□□□□□ -2.1
COL9A1P20849 RNA5SP160-201ENST00000364866 120 ntBASIC1.94□□□□□ -2.1
COL9A1P20849 RNU6-269P-201ENST00000391077 97 ntBASIC1.94□□□□□ -2.1
COL9A1P20849 MIR548X-201ENST00000580069 75 ntBASIC1.94□□□□□ -2.1
COL9A1P20849 MIR5694-201ENST00000581190 76 ntBASIC1.94□□□□□ -2.1
COL9A1P20849 U4.4-201ENST00000620626 117 ntBASIC1.94□□□□□ -2.1
COL9A1P20849 MIR520E-201ENST00000384867 87 ntBASIC1.93□□□□□ -2.1
COL9A1P20849 SNORD105-201ENST00000386910 85 ntBASIC1.93□□□□□ -2.1
COL9A1P20849 RNU6-696P-201ENST00000390834 107 ntBASIC1.93□□□□□ -2.1
COL9A1P20849 AC002429.1-201ENST00000437672 148 ntBASIC1.93□□□□□ -2.1
COL9A1P20849 Y_RNA.125-201ENST00000363371 111 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 RNU6-716P-201ENST00000365621 103 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 MIR9-3-201ENST00000385084 90 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 FABP5P4-201ENST00000437203 171 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 U7.7-201ENST00000459276 60 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 SCARNA16.5-201ENST00000517114 183 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 MIR502-201ENST00000606349 86 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 MIR6788-201ENST00000618842 66 ntBASIC1.92□□□□□ -2.1
COL9A1P20849 RNU1-42P-201ENST00000364033 160 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 SNORA63.6-201ENST00000364921 119 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 MIR222-201ENST00000384992 110 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 MIR676-201ENST00000390702 67 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 AC098934.3-201ENST00000430450 190 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 RNA5SP436-201ENST00000516020 115 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 SCARNA17.3-201ENST00000516381 125 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 RNU1-92P-201ENST00000517017 135 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 RNU6-894P-201ENST00000517094 105 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.91□□□□□ -2.1
COL9A1P20849 MIR517C-201ENST00000385103 95 ntBASIC1.9□□□□□ -2.11
COL9A1P20849 RNA5SP484-201ENST00000458857 111 ntBASIC1.9□□□□□ -2.11
COL9A1P20849 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.9□□□□□ -2.11
COL9A1P20849 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.9□□□□□ -2.11
COL9A1P20849 SNORA33.1-201ENST00000364957 130 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 Y_RNA.407-201ENST00000383986 113 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 MIR216A-201ENST00000385063 110 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 SNORD89-201ENST00000390981 114 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 MIR3678-201ENST00000578455 94 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 AL162376.1-201ENST00000624117 175 ntBASIC1.89□□□□□ -2.11
COL9A1P20849 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.88□□□□□ -2.11
COL9A1P20849 RNU1-93P-201ENST00000364704 169 ntBASIC1.88□□□□□ -2.11
COL9A1P20849 MIR548J-201ENST00000408833 112 ntBASIC1.88□□□□□ -2.11
COL9A1P20849 RNU6-231P-201ENST00000517122 103 ntBASIC1.88□□□□□ -2.11
COL9A1P20849 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
COL9A1P20849 RNA5SP62-201ENST00000363457 110 ntBASIC1.87□□□□□ -2.11
COL9A1P20849 RNU6-247P-201ENST00000362636 107 ntBASIC1.86□□□□□ -2.11
COL9A1P20849 Y_RNA.115-201ENST00000363272 98 ntBASIC1.86□□□□□ -2.11
COL9A1P20849 Y_RNA.246-201ENST00000364495 108 ntBASIC1.86□□□□□ -2.11
COL9A1P20849 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
COL9A1P20849 SNORA40.16-201ENST00000517238 121 ntBASIC1.86□□□□□ -2.11
COL9A1P20849 U6.103-201ENST00000637085 61 ntBASIC1.86□□□□□ -2.11
COL9A1P20849 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
COL9A1P20849 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
COL9A1P20849 RNU6ATAC29P-201ENST00000408088 125 ntBASIC1.85□□□□□ -2.11
COL9A1P20849 SNORA25-201ENST00000384384 134 ntBASIC1.84□□□□□ -2.11
COL9A1P20849 MIR573-201ENST00000384964 99 ntBASIC1.84□□□□□ -2.11
COL9A1P20849 MIR6828-201ENST00000636181 60 ntBASIC1.84□□□□□ -2.11
COL9A1P20849 RNU6-986P-201ENST00000363133 102 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 MIR652-201ENST00000385278 98 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 RNU6-717P-201ENST00000459076 104 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 SNORD53B-201ENST00000577887 78 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 MIR3612-201ENST00000579753 87 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.83□□□□□ -2.12
COL9A1P20849 MIR4421-201ENST00000578133 69 ntBASIC1.82□□□□□ -2.12
COL9A1P20849 MIR4255-201ENST00000579351 72 ntBASIC1.82□□□□□ -2.12
COL9A1P20849 MIR6086-201ENST00000638065 55 ntBASIC1.82□□□□□ -2.12
COL9A1P20849 SNORA25.8-201ENST00000364831 128 ntBASIC1.81□□□□□ -2.12
COL9A1P20849 SNORA41B-201ENST00000384785 128 ntBASIC1.81□□□□□ -2.12
COL9A1P20849 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
COL9A1P20849 SNORD116.2-201ENST00000391251 93 ntBASIC1.81□□□□□ -2.12
COL9A1P20849 MIR193B-201ENST00000384907 83 ntBASIC1.8□□□□□ -2.12
COL9A1P20849 AL021921.1-201ENST00000442774 93 ntBASIC1.8□□□□□ -2.12
COL9A1P20849 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.8□□□□□ -2.12
COL9A1P20849 MIR1273G-201ENST00000577677 100 ntBASIC1.8□□□□□ -2.12
COL9A1P20849 AL353770.2-201ENST00000620024 78 ntBASIC1.8□□□□□ -2.12
COL9A1P20849 Y_RNA.325-201ENST00000365171 122 ntBASIC1.79□□□□□ -2.12
COL9A1P20849 RNA5SP338-201ENST00000410495 85 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 264.4 ms