Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SNORD18A-201ENST00000363753 72 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 RNU4-45P-201ENST00000365469 141 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 RNU6-1039P-201ENST00000383931 107 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 SNORD45A-201ENST00000384512 84 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 RNU6-604P-201ENST00000390917 100 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 RNA5SP61-201ENST00000516453 100 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.49□□□□□ -2.17
USP3Q9Y6I4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.48□□□□□ -2.17
USP3Q9Y6I4 SNORD114-24-201ENST00000365029 72 ntBASIC1.48□□□□□ -2.17
USP3Q9Y6I4 Y_RNA.443-201ENST00000384135 111 ntBASIC1.48□□□□□ -2.17
USP3Q9Y6I4 SNORD113.1-201ENST00000363280 73 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 RNU6-630P-201ENST00000391258 106 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 RNU1-92P-201ENST00000517017 135 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 SCARNA16.5-201ENST00000517114 183 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 MIR4421-201ENST00000578133 69 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 AC005520.4-201ENST00000604337 90 ntBASIC1.47□□□□□ -2.17
USP3Q9Y6I4 RNU1-124P-201ENST00000363861 145 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 RNU6-726P-201ENST00000364680 107 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 Y_RNA.338-201ENST00000365320 114 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 MIR7-2-201ENST00000384970 110 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 snoU13.31-201ENST00000607291 104 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 MIR6509-201ENST00000614603 85 ntBASIC1.46□□□□□ -2.18
USP3Q9Y6I4 MIR337-201ENST00000362281 93 ntBASIC1.45□□□□□ -2.18
USP3Q9Y6I4 MT-TY-201ENST00000387409 66 ntBASIC1.45□□□□□ -2.18
USP3Q9Y6I4 MIR4498-201ENST00000577599 66 ntBASIC1.45□□□□□ -2.18
USP3Q9Y6I4 MIR3678-201ENST00000578455 94 ntBASIC1.45□□□□□ -2.18
USP3Q9Y6I4 MIR3612-201ENST00000579753 87 ntBASIC1.45□□□□□ -2.18
USP3Q9Y6I4 SNORD114-4-201ENST00000363962 75 ntBASIC1.44□□□□□ -2.18
USP3Q9Y6I4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
USP3Q9Y6I4 MIR618-201ENST00000385287 98 ntBASIC1.44□□□□□ -2.18
USP3Q9Y6I4 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
USP3Q9Y6I4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.44□□□□□ -2.18
USP3Q9Y6I4 MIR4460-201ENST00000577862 86 ntBASIC1.44□□□□□ -2.18
USP3Q9Y6I4 AC073869.9-201ENST00000641610 120 ntBASIC1.44□□□□□ -2.18
USP3Q9Y6I4 SNORA25.8-201ENST00000364831 128 ntBASIC1.43□□□□□ -2.18
USP3Q9Y6I4 SNORA8.2-201ENST00000384372 139 ntBASIC1.43□□□□□ -2.18
USP3Q9Y6I4 MTND4LP1-201ENST00000446263 157 ntBASIC1.43□□□□□ -2.18
USP3Q9Y6I4 RNU6-54P-201ENST00000365563 107 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 RNU6V-201ENST00000384105 107 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 RNA5SP247-201ENST00000411181 105 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 SNORD124-201ENST00000459577 104 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 RNA5SP255-201ENST00000516370 107 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 AC068338.1-201ENST00000565567 176 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 NAMPTP3-201ENST00000569273 224 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 AC103706.3-201ENST00000636297 85 ntBASIC1.42□□□□□ -2.18
USP3Q9Y6I4 MIR3660-201ENST00000584845 100 ntBASIC1.41□□□□□ -2.18
USP3Q9Y6I4 MIR6828-201ENST00000636181 60 ntBASIC1.41□□□□□ -2.18
USP3Q9Y6I4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.18
USP3Q9Y6I4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.4□□□□□ -2.19
USP3Q9Y6I4 RNU1-141P-201ENST00000364623 158 ntBASIC1.4□□□□□ -2.19
USP3Q9Y6I4 RNU6-1053P-201ENST00000515930 101 ntBASIC1.4□□□□□ -2.19
USP3Q9Y6I4 RNA5SP404-201ENST00000517118 132 ntBASIC1.4□□□□□ -2.19
USP3Q9Y6I4 SNORA2.1-201ENST00000363089 137 ntBASIC1.39□□□□□ -2.19
USP3Q9Y6I4 SNORD116-24-201ENST00000384549 92 ntBASIC1.39□□□□□ -2.19
USP3Q9Y6I4 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.39□□□□□ -2.19
USP3Q9Y6I4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.39□□□□□ -2.19
USP3Q9Y6I4 RNU6-260P-201ENST00000384092 107 ntBASIC1.38□□□□□ -2.19
USP3Q9Y6I4 MIR758-201ENST00000390227 88 ntBASIC1.38□□□□□ -2.19
USP3Q9Y6I4 AC069503.3-201ENST00000618674 145 ntBASIC1.38□□□□□ -2.19
USP3Q9Y6I4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
USP3Q9Y6I4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
USP3Q9Y6I4 Y_RNA.250-201ENST00000364542 110 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 RNU6-716P-201ENST00000365621 103 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 SNORA40.6-201ENST00000391153 128 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 MIR4511-201ENST00000582784 87 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 MIR3657-201ENST00000584818 117 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 MIR7974-201ENST00000615835 79 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 AL353770.2-201ENST00000620024 78 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 AL162376.1-201ENST00000624117 175 ntBASIC1.37□□□□□ -2.19
USP3Q9Y6I4 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.36□□□□□ -2.19
USP3Q9Y6I4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
USP3Q9Y6I4 RNU6-668P-201ENST00000364180 107 ntBASIC1.35□□□□□ -2.19
USP3Q9Y6I4 RNU6-269P-201ENST00000391077 97 ntBASIC1.35□□□□□ -2.19
USP3Q9Y6I4 RNU6-955P-201ENST00000410497 104 ntBASIC1.35□□□□□ -2.19
USP3Q9Y6I4 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.34□□□□□ -2.19
USP3Q9Y6I4 MIR18A-201ENST00000362310 71 ntBASIC1.34□□□□□ -2.19
USP3Q9Y6I4 RNU6-321P-201ENST00000410912 106 ntBASIC1.34□□□□□ -2.19
USP3Q9Y6I4 SNORD42B-201ENST00000458893 67 ntBASIC1.34□□□□□ -2.19
USP3Q9Y6I4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.33□□□□□ -2.2
USP3Q9Y6I4 RNA5SP227-201ENST00000516184 113 ntBASIC1.33□□□□□ -2.2
USP3Q9Y6I4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
USP3Q9Y6I4 AC011195.1-201ENST00000578177 177 ntBASIC1.32□□□□□ -2.2
USP3Q9Y6I4 MIR26B-201ENST00000362251 77 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 RNU6-392P-201ENST00000364926 101 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 RNU6-1335P-201ENST00000365426 107 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 RNU6-669P-201ENST00000365575 107 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 MIR203A-201ENST00000384836 110 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 SNORD99-201ENST00000408612 74 ntBASIC1.31□□□□□ -2.2
USP3Q9Y6I4 TRMT112P2-201ENST00000512910 132 ntBASIC1.3□□□□□ -2.2
USP3Q9Y6I4 RNU6-982P-201ENST00000516216 102 ntBASIC1.3□□□□□ -2.2
USP3Q9Y6I4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.3□□□□□ -2.2
USP3Q9Y6I4 RNU6-645P-201ENST00000364649 106 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 MIR1287-201ENST00000408492 90 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.29□□□□□ -2.2
USP3Q9Y6I4 RNA5SP484-201ENST00000458857 111 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 RNU6-542P-201ENST00000516405 103 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 RNA5SP268-201ENST00000516828 124 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 AC018659.1-201ENST00000551083 169 ntBASIC1.29□□□□□ -2.2
USP3Q9Y6I4 MIR150-201ENST00000385048 84 ntBASIC1.28□□□□□ -2.2
USP3Q9Y6I4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 217.9 ms