Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR1273D-201ENST00000577266 86 ntBASIC2.09□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA8.2-201ENST00000384372 139 ntBASIC2.08□□□□□ -2.08
VPS9D1Q9Y2B5 MIR1289-2-201ENST00000408360 111 ntBASIC2.08□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-548P-201ENST00000517083 115 ntBASIC2.08□□□□□ -2.08
VPS9D1Q9Y2B5 MIR7843-201ENST00000622274 79 ntBASIC2.08□□□□□ -2.08
VPS9D1Q9Y2B5 SNORD116-16-201ENST00000384533 92 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 MIR764-201ENST00000390811 85 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-1246P-201ENST00000391064 107 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 RNA5SP425-201ENST00000410336 112 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 AL356379.1-201ENST00000414105 126 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 SNORD79.1-201ENST00000516069 84 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 MIR4648-201ENST00000580107 72 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 MIR5002-201ENST00000584713 97 ntBASIC2.07□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-716P-201ENST00000365621 103 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 MIR545-201ENST00000385085 106 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 MIR517C-201ENST00000385103 95 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-269P-201ENST00000391077 97 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 SCARNA17.3-201ENST00000516381 125 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 AC015712.3-201ENST00000559380 164 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 MIR219B-201ENST00000637023 88 ntBASIC2.06□□□□□ -2.08
VPS9D1Q9Y2B5 MIR17-201ENST00000385012 84 ntBASIC2.05□□□□□ -2.08
VPS9D1Q9Y2B5 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC2.05□□□□□ -2.08
VPS9D1Q9Y2B5 Y_RNA.74-201ENST00000362911 99 ntBASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-838P-201ENST00000363399 108 ntBASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 RNA5SP484-201ENST00000458857 111 ntBASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 RNA5SP47-201ENST00000517230 109 ntBASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 CYP3A54P-201ENST00000566950 75 ntBASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
VPS9D1Q9Y2B5 SNORA40B-201ENST00000385573 128 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 AL021921.1-201ENST00000442774 93 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 RNU6-717P-201ENST00000459076 104 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 RNA5SP233-201ENST00000459153 113 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 MIR4448-201ENST00000584360 86 ntBASIC2.03□□□□□ -2.08
VPS9D1Q9Y2B5 SNORD18A-201ENST00000363753 72 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 Y_RNA.407-201ENST00000383986 113 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 MIR504-201ENST00000385065 83 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 MIR652-201ENST00000385278 98 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 MIR4769-201ENST00000584126 77 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 MIR4781-201ENST00000585250 76 ntBASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS9D1Q9Y2B5 SNORA64-201ENST00000384674 134 ntBASIC2.01□□□□□ -2.09
VPS9D1Q9Y2B5 RNU1-78P-201ENST00000391248 165 ntBASIC2.01□□□□□ -2.09
VPS9D1Q9Y2B5 MIR4524B-201ENST00000581569 115 ntBASIC2.01□□□□□ -2.09
VPS9D1Q9Y2B5 RNA5SP160-201ENST00000364866 120 ntBASIC2□□□□□ -2.09
VPS9D1Q9Y2B5 MIR527-201ENST00000385244 85 ntBASIC2□□□□□ -2.09
VPS9D1Q9Y2B5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2□□□□□ -2.09
VPS9D1Q9Y2B5 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
VPS9D1Q9Y2B5 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.99□□□□□ -2.09
VPS9D1Q9Y2B5 RNA5SP338-201ENST00000410495 85 ntBASIC1.99□□□□□ -2.09
VPS9D1Q9Y2B5 RNU6-237P-201ENST00000515985 71 ntBASIC1.99□□□□□ -2.09
VPS9D1Q9Y2B5 RNU6-518P-201ENST00000516056 96 ntBASIC1.99□□□□□ -2.09
VPS9D1Q9Y2B5 SNORD114-1-201ENST00000362705 72 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 RNU6-810P-201ENST00000364001 107 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 Y_RNA.282-201ENST00000364793 102 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 MIR582-201ENST00000365731 98 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 RNA5SP364-201ENST00000516938 78 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 U6.96-201ENST00000636425 70 ntBASIC1.98□□□□□ -2.09
VPS9D1Q9Y2B5 MIR548E-201ENST00000408287 88 ntBASIC1.97□□□□□ -2.09
VPS9D1Q9Y2B5 AL591806.2-201ENST00000433122 173 ntBASIC1.97□□□□□ -2.09
VPS9D1Q9Y2B5 MIR3198-2-201ENST00000577868 80 ntBASIC1.97□□□□□ -2.09
VPS9D1Q9Y2B5 MIR4422-201ENST00000581938 83 ntBASIC1.97□□□□□ -2.09
VPS9D1Q9Y2B5 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
VPS9D1Q9Y2B5 SNORA70.22-201ENST00000517160 124 ntBASIC1.96□□□□□ -2.1
VPS9D1Q9Y2B5 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
VPS9D1Q9Y2B5 SCARNA16.5-201ENST00000517114 183 ntBASIC1.95□□□□□ -2.1
VPS9D1Q9Y2B5 AL096840.1-201ENST00000603287 93 ntBASIC1.95□□□□□ -2.1
VPS9D1Q9Y2B5 Y_RNA.783-201ENST00000613546 102 ntBASIC1.95□□□□□ -2.1
VPS9D1Q9Y2B5 AL162376.1-201ENST00000624117 175 ntBASIC1.95□□□□□ -2.1
VPS9D1Q9Y2B5 RNA5SP99-201ENST00000364020 114 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 SNORD12-201ENST00000391002 90 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 snoU13.23-201ENST00000458863 104 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 RNU1-92P-201ENST00000517017 135 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 uc_338.20-201ENST00000621563 178 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.94□□□□□ -2.1
VPS9D1Q9Y2B5 RNU6-247P-201ENST00000362636 107 ntBASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 RNU6-246P-201ENST00000384702 107 ntBASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 MIR3678-201ENST00000578455 94 ntBASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 MIR548AE1-201ENST00000583292 70 ntBASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.93□□□□□ -2.1
VPS9D1Q9Y2B5 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS9D1Q9Y2B5 RNU6-172P-201ENST00000411000 93 ntBASIC1.92□□□□□ -2.1
VPS9D1Q9Y2B5 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
VPS9D1Q9Y2B5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
VPS9D1Q9Y2B5 MIR516B1-201ENST00000385211 90 ntBASIC1.91□□□□□ -2.1
VPS9D1Q9Y2B5 SNORD105-201ENST00000386910 85 ntBASIC1.91□□□□□ -2.1
VPS9D1Q9Y2B5 U7.7-201ENST00000459276 60 ntBASIC1.91□□□□□ -2.1
VPS9D1Q9Y2B5 RNU6-1110P-201ENST00000516462 101 ntBASIC1.91□□□□□ -2.1
VPS9D1Q9Y2B5 MIR519A2-201ENST00000384990 87 ntBASIC1.9□□□□□ -2.11
VPS9D1Q9Y2B5 SNORD89-201ENST00000390981 114 ntBASIC1.9□□□□□ -2.11
VPS9D1Q9Y2B5 RNU6-419P-201ENST00000517030 63 ntBASIC1.9□□□□□ -2.11
VPS9D1Q9Y2B5 MIR4473-201ENST00000583731 91 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 240.6 ms