Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 RNU6-935P-201ENST00000410371 100 ntBASIC0.21□□□□□ -2.38
LIMA1Q9UHB6 RNU6-519P-201ENST00000410590 108 ntBASIC0.21□□□□□ -2.38
LIMA1Q9UHB6 AC026421.1-201ENST00000519101 163 ntBASIC0.21□□□□□ -2.38
LIMA1Q9UHB6 MIR330-201ENST00000362196 94 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.115-201ENST00000363272 98 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 MIR488-201ENST00000365739 83 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 SNORD110-201ENST00000408189 75 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 AC006210.1-201ENST00000424882 111 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 MIR3064-201ENST00000581130 66 ntBASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.2□□□□□ -2.38
LIMA1Q9UHB6 SNORA9.1-201ENST00000362412 131 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 RNU6-127P-201ENST00000390897 107 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 RNA5SP292-201ENST00000390974 118 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 RNU7-129P-201ENST00000516128 62 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 SNORA40.13-201ENST00000516379 120 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 MIR499B-201ENST00000636498 73 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 MIR4315-1-201ENST00000636800 73 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 MIR4315-2-201ENST00000640925 73 ntBASIC0.19□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.81-201ENST00000362997 102 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 MIR451A-201ENST00000385059 72 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 MT-TY-201ENST00000387409 66 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.609-201ENST00000410669 89 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 MIR548AD-201ENST00000584780 82 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 AC104996.3-201ENST00000590718 94 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 MALAT1.1-201ENST00000618249 95 ntBASIC0.18□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.239-201ENST00000364444 113 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 MIR548H2-201ENST00000408874 88 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 RNA5SP89-201ENST00000410300 108 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 RNU6-168P-201ENST00000516189 101 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 MIR4677-201ENST00000584153 80 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 AC069503.3-201ENST00000618674 145 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 MIR2052-201ENST00000636055 55 ntBASIC0.17□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.125-201ENST00000363371 111 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 RNU6-811P-201ENST00000384069 107 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 SNORD90-201ENST00000391145 111 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 Y_RNA.677-201ENST00000516401 85 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 RNA5SP330-201ENST00000517096 96 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 MIR4460-201ENST00000577862 86 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 MIR4514-201ENST00000581410 57 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 MIR548O2-201ENST00000616090 70 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 AL109933.3-201ENST00000619095 188 ntBASIC0.16□□□□□ -2.38
LIMA1Q9UHB6 SNORA42.1-201ENST00000363515 137 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 RNU5B-6P-201ENST00000516765 68 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 YWHAEP2-201ENST00000580066 112 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 MIR548AE1-201ENST00000583292 70 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 MIR4473-201ENST00000583731 91 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 MIR3925-201ENST00000584674 77 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 AC023932.2-201ENST00000603176 175 ntBASIC0.15□□□□□ -2.39
LIMA1Q9UHB6 RNU6-161P-201ENST00000363051 106 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 RNU4-32P-201ENST00000363404 141 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 SNORD115-27-201ENST00000364430 82 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 Y_RNA.491-201ENST00000384417 107 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 MIR548U-201ENST00000390728 81 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 RNA5SP299-201ENST00000391203 116 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 RNA5SP63-201ENST00000391225 112 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 SNORA25.13-201ENST00000516395 103 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 MIR3140-201ENST00000583685 90 ntBASIC0.14□□□□□ -2.39
LIMA1Q9UHB6 RNU6V-201ENST00000384105 107 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 SNORA24B-201ENST00000384176 131 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 RNY1P7-201ENST00000384743 110 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 MIR643-201ENST00000385267 97 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 MIR1197-201ENST00000408818 88 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 RNU6-782P-201ENST00000516852 104 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 RNU6-1057P-201ENST00000517162 102 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 U7.6-201ENST00000610841 64 ntBASIC0.13□□□□□ -2.39
LIMA1Q9UHB6 RNA5SP257-201ENST00000363023 116 ntBASIC0.12□□□□□ -2.39
LIMA1Q9UHB6 RNU6-1052P-201ENST00000411398 104 ntBASIC0.12□□□□□ -2.39
LIMA1Q9UHB6 SNORA18.5-201ENST00000516616 101 ntBASIC0.12□□□□□ -2.39
LIMA1Q9UHB6 RNU6-719P-201ENST00000516671 104 ntBASIC0.12□□□□□ -2.39
LIMA1Q9UHB6 AC104408.1-201ENST00000605241 170 ntBASIC0.12□□□□□ -2.39
LIMA1Q9UHB6 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.11□□□□□ -2.39
LIMA1Q9UHB6 RNU6-54P-201ENST00000365563 107 ntBASIC0.11□□□□□ -2.39
LIMA1Q9UHB6 U3.27-201ENST00000391237 200 ntBASIC0.11□□□□□ -2.39
LIMA1Q9UHB6 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
LIMA1Q9UHB6 FGF7P7-201ENST00000514120 227 ntBASIC0.11□□□□□ -2.39
LIMA1Q9UHB6 SNORA63.2-201ENST00000362603 126 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 SNORD114-9-201ENST00000364370 72 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 Y_RNA.258-201ENST00000364613 105 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 RNU6-1051P-201ENST00000365471 102 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 MIR216B-201ENST00000390186 82 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 MIR4668-201ENST00000582284 70 ntBASIC0.1□□□□□ -2.39
LIMA1Q9UHB6 Y_RNA.30-201ENST00000362572 97 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNA5SP214-201ENST00000363378 118 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNU6-219P-201ENST00000364728 107 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNU6-497P-201ENST00000365316 104 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 Y_RNA.437-201ENST00000384113 113 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNU6-49P-201ENST00000384256 107 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 MIR516B1-201ENST00000385211 90 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 MIR876-201ENST00000401147 81 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 Y_RNA.620-201ENST00000411009 88 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNU7-153P-201ENST00000516455 62 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 MIR4768-201ENST00000585270 74 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 MIR371B-201ENST00000638082 66 ntBASIC0.09□□□□□ -2.4
LIMA1Q9UHB6 RNU6-1131P-201ENST00000364955 107 ntBASIC0.08□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 227.7 ms