Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 AP000676.1-201ENST00000533307 52 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 MIR4694-201ENST00000578534 80 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 uc_338.36-201ENST00000622331 158 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 AL157777.2-201ENST00000258070 137 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 SNORD56B-201ENST00000384713 71 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 MIR652-201ENST00000385278 98 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 SNORA49-201ENST00000386157 136 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 SNORD75.1-201ENST00000408373 60 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 RNU4-63P-201ENST00000411313 118 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 RNA5SP66-201ENST00000517178 101 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 MIR4436A-201ENST00000585278 85 ntBASIC-0.58□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.180-201ENST00000363867 113 ntBASIC-0.59□□□□□ -2.5
DDX28Q9NUL7 RNU6-257P-201ENST00000410238 98 ntBASIC-0.59□□□□□ -2.5
DDX28Q9NUL7 AC145423.2-201ENST00000610631 239 ntBASIC-0.59□□□□□ -2.5
DDX28Q9NUL7 MIR409-201ENST00000362237 79 ntBASIC-0.6□□□□□ -2.51
DDX28Q9NUL7 RNU6-832P-201ENST00000363319 107 ntBASIC-0.6□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.6□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.6□□□□□ -2.51
DDX28Q9NUL7 RNU6-1212P-201ENST00000517023 104 ntBASIC-0.6□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 RNU6-900P-201ENST00000384498 102 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 U3.27-201ENST00000391237 200 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 RNU6-1211P-201ENST00000459179 105 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 RNU6-86P-201ENST00000606534 107 ntBASIC-0.61□□□□□ -2.51
DDX28Q9NUL7 RNY3P2-201ENST00000362918 102 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 SNORA3B-201ENST00000391305 131 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 snoU13.13-201ENST00000458842 104 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 AC097510.1-201ENST00000510945 133 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 MIR548AX-201ENST00000580117 73 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 AL035470.1-201ENST00000622571 220 ntBASIC-0.62□□□□□ -2.51
DDX28Q9NUL7 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 RNU6-75P-201ENST00000515944 104 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 RNU6-65P-201ENST00000516332 98 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 RNU6-794P-201ENST00000517261 64 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 AC068339.1-201ENST00000526965 141 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 MIR4536-1-201ENST00000583537 88 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 MIR4439-201ENST00000583746 80 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 AC025521.1-201ENST00000621624 286 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 AL391099.1-201ENST00000624635 187 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 AC093726.3-201ENST00000637588 150 ntBASIC-0.63□□□□□ -2.51
DDX28Q9NUL7 SNORD114-14-201ENST00000362723 75 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 RNA5SP331-201ENST00000364986 107 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 MIR582-201ENST00000365731 98 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 RNY1P5-201ENST00000383890 115 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 MIR451A-201ENST00000385059 72 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 SNORD38.3-201ENST00000516599 73 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 AC090425.1-201ENST00000610007 140 ntBASIC-0.64□□□□□ -2.51
DDX28Q9NUL7 SNORD50.2-201ENST00000365465 70 ntBASIC-0.65□□□□□ -2.51
DDX28Q9NUL7 SNORD57-201ENST00000448188 72 ntBASIC-0.65□□□□□ -2.51
DDX28Q9NUL7 RNU6-762P-201ENST00000517107 102 ntBASIC-0.65□□□□□ -2.51
DDX28Q9NUL7 MIR4280-201ENST00000582178 76 ntBASIC-0.65□□□□□ -2.51
DDX28Q9NUL7 SNORD114-4-201ENST00000363962 75 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 RNU6-54P-201ENST00000365563 107 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 RNU6-901P-201ENST00000384593 106 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 RNU7-107P-201ENST00000459121 61 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 SNORD2-201ENST00000459163 69 ntBASIC-0.66□□□□□ -2.52
DDX28Q9NUL7 SNORD45B-201ENST00000364617 72 ntBASIC-0.67□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.67□□□□□ -2.52
DDX28Q9NUL7 RNA5SP266-201ENST00000410273 108 ntBASIC-0.67□□□□□ -2.52
DDX28Q9NUL7 RNU7-55P-201ENST00000459426 62 ntBASIC-0.67□□□□□ -2.52
DDX28Q9NUL7 MIR3914-2-201ENST00000637339 95 ntBASIC-0.67□□□□□ -2.52
DDX28Q9NUL7 SNORD115-25-201ENST00000362619 82 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 RNU6-80P-201ENST00000384195 107 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 RNU6-346P-201ENST00000516288 111 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 RNU6-971P-201ENST00000516920 106 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 RNU6-255P-201ENST00000516957 105 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 AL513043.2-201ENST00000573941 143 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 MIR5009-201ENST00000578736 100 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 MIR3681-201ENST00000580089 72 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 MIR5704-201ENST00000584029 77 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.68□□□□□ -2.52
DDX28Q9NUL7 MT-TQ-201ENST00000387372 72 ntBASIC-0.69□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.69□□□□□ -2.52
DDX28Q9NUL7 MIR548E-201ENST00000408287 88 ntBASIC-0.69□□□□□ -2.52
DDX28Q9NUL7 MIR3613-201ENST00000579844 87 ntBASIC-0.69□□□□□ -2.52
DDX28Q9NUL7 MIR6851-201ENST00000617060 67 ntBASIC-0.69□□□□□ -2.52
DDX28Q9NUL7 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.7□□□□□ -2.52
DDX28Q9NUL7 SNORA40.17-201ENST00000517256 115 ntBASIC-0.7□□□□□ -2.52
DDX28Q9NUL7 U6.95-201ENST00000636931 70 ntBASIC-0.7□□□□□ -2.52
DDX28Q9NUL7 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 RNU6-476P-201ENST00000384726 107 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 MIR548A1-201ENST00000385041 97 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 MIR204-201ENST00000385200 110 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 RNU6-644P-201ENST00000391155 98 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 RNU7-85P-201ENST00000458851 63 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 RNY1P9-201ENST00000532431 109 ntBASIC-0.71□□□□□ -2.52
DDX28Q9NUL7 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.72□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 240 ms