Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU2-51P-201ENST00000410708 197 ntBASIC-0.03□□□□□ -2.41
NKX3-1Q99801 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.03□□□□□ -2.41
NKX3-1Q99801 RNU6-65P-201ENST00000516332 98 ntBASIC-0.03□□□□□ -2.41
NKX3-1Q99801 MIR4290-201ENST00000583807 95 ntBASIC-0.03□□□□□ -2.41
NKX3-1Q99801 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.03□□□□□ -2.41
NKX3-1Q99801 AC084368.1-201ENST00000620935 65 ntBASIC-0.03□□□□□ -2.41
NKX3-1Q99801 RNU6-834P-201ENST00000362367 110 ntBASIC-0.04□□□□□ -2.42
NKX3-1Q99801 RNU6-132P-201ENST00000383863 107 ntBASIC-0.04□□□□□ -2.42
NKX3-1Q99801 RNA5SP163-201ENST00000410304 99 ntBASIC-0.04□□□□□ -2.42
NKX3-1Q99801 MIR371B-201ENST00000638082 66 ntBASIC-0.04□□□□□ -2.42
NKX3-1Q99801 MIR106A-201ENST00000384870 81 ntBASIC-0.05□□□□□ -2.42
NKX3-1Q99801 RNU6-935P-201ENST00000410371 100 ntBASIC-0.05□□□□□ -2.42
NKX3-1Q99801 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.05□□□□□ -2.42
NKX3-1Q99801 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 RNU6-929P-201ENST00000384429 107 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 SNORD4B-201ENST00000459083 72 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 RNU6-719P-201ENST00000516671 104 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 RN7SL660P-201ENST00000614852 299 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 uc_338.10-201ENST00000621872 182 ntBASIC-0.06□□□□□ -2.42
NKX3-1Q99801 Y_RNA.374-201ENST00000365606 101 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 SNORD58A-201ENST00000383875 65 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 MIR451A-201ENST00000385059 72 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 MIR876-201ENST00000401147 81 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.07□□□□□ -2.42
NKX3-1Q99801 RNU6V-201ENST00000384105 107 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 SNORA75.1-201ENST00000391130 148 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 MIR892B-201ENST00000401279 77 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 RNU4-61P-201ENST00000411243 107 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 RNU7-165P-201ENST00000458864 60 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 RNU7-61P-201ENST00000515897 61 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 RNU6-180P-201ENST00000516697 61 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 RNU7-188P-201ENST00000517063 64 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 MIR4743-201ENST00000584576 69 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 MIR548O2-201ENST00000616090 70 ntBASIC-0.08□□□□□ -2.42
NKX3-1Q99801 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 RNU6-1325P-201ENST00000364905 105 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
NKX3-1Q99801 RNY4P18-201ENST00000391107 89 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 RNU6-406P-201ENST00000516470 107 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 RNU6-789P-201ENST00000517105 102 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 MIR6514-201ENST00000622549 70 ntBASIC-0.09□□□□□ -2.42
NKX3-1Q99801 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-154P-201ENST00000384306 106 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-972P-201ENST00000391208 107 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-519P-201ENST00000410590 108 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-887P-201ENST00000410660 100 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU7-159P-201ENST00000459284 62 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 FGF7P7-201ENST00000514120 227 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-162P-201ENST00000516228 103 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 MIR3064-201ENST00000581130 66 ntBASIC-0.1□□□□□ -2.43
NKX3-1Q99801 RNU6-1290P-201ENST00000362957 109 ntBASIC-0.11□□□□□ -2.43
NKX3-1Q99801 RNU6-54P-201ENST00000365563 107 ntBASIC-0.11□□□□□ -2.43
NKX3-1Q99801 MIR652-201ENST00000385278 98 ntBASIC-0.11□□□□□ -2.43
NKX3-1Q99801 AC026421.1-201ENST00000519101 163 ntBASIC-0.11□□□□□ -2.43
NKX3-1Q99801 MIR3140-201ENST00000583685 90 ntBASIC-0.11□□□□□ -2.43
NKX3-1Q99801 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.11□□□□□ -2.43
NKX3-1Q99801 MIR450A1-201ENST00000362262 91 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 RNA5SP292-201ENST00000390974 118 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 SNORD90-201ENST00000391145 111 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.12□□□□□ -2.43
NKX3-1Q99801 RNU6-766P-201ENST00000362478 107 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 Y_RNA.190-201ENST00000363964 101 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 RNU6-175P-201ENST00000516896 107 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 RNU6-762P-201ENST00000517107 102 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 AC104996.3-201ENST00000590718 94 ntBASIC-0.13□□□□□ -2.43
NKX3-1Q99801 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 RNU6-302P-201ENST00000365249 107 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 RNA5SP285-201ENST00000516619 119 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 CR383656.4-201ENST00000546909 122 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 U7.3-201ENST00000616123 62 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.14□□□□□ -2.43
NKX3-1Q99801 RNU6-811P-201ENST00000384069 107 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 MIR216B-201ENST00000390186 82 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 MIR548U-201ENST00000390728 81 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 U3.27-201ENST00000391237 200 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 Y_RNA.609-201ENST00000410669 89 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 Y_RNA.629-201ENST00000411368 105 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 MIR1295B-201ENST00000636144 60 ntBASIC-0.15□□□□□ -2.43
NKX3-1Q99801 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 SNORD20-201ENST00000384550 80 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 MIR329-2-201ENST00000385029 84 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 AL031737.1-201ENST00000450125 223 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 SNORD42B-201ENST00000458893 67 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 SNORA18.5-201ENST00000516616 101 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 U2.22-201ENST00000636441 106 ntBASIC-0.16□□□□□ -2.44
NKX3-1Q99801 SNORA63.4-201ENST00000362763 126 ntBASIC-0.17□□□□□ -2.44
NKX3-1Q99801 RNU4-32P-201ENST00000363404 141 ntBASIC-0.17□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 181.2 ms