Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.18□□□□□ -2.6
CCDC43Q96MW1 RNA5SP331-201ENST00000364986 107 ntBASIC-1.18□□□□□ -2.6
CCDC43Q96MW1 SNORD2-201ENST00000459163 69 ntBASIC-1.18□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.18□□□□□ -2.6
CCDC43Q96MW1 SCARNA17-201ENST00000516183 144 ntBASIC-1.18□□□□□ -2.6
CCDC43Q96MW1 RNY4P6-201ENST00000363667 96 ntBASIC-1.19□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.457-201ENST00000384237 111 ntBASIC-1.19□□□□□ -2.6
CCDC43Q96MW1 AC097510.1-201ENST00000510945 133 ntBASIC-1.19□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.19□□□□□ -2.6
CCDC43Q96MW1 SNORD116-18-201ENST00000383961 92 ntBASIC-1.2□□□□□ -2.6
CCDC43Q96MW1 Y_RNA.420-201ENST00000384043 110 ntBASIC-1.2□□□□□ -2.6
CCDC43Q96MW1 MIR548E-201ENST00000408287 88 ntBASIC-1.2□□□□□ -2.6
CCDC43Q96MW1 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.2□□□□□ -2.6
CCDC43Q96MW1 RNU6-719P-201ENST00000516671 104 ntBASIC-1.2□□□□□ -2.6
CCDC43Q96MW1 RNU6-973P-201ENST00000364690 107 ntBASIC-1.21□□□□□ -2.6
CCDC43Q96MW1 SNORD83B-201ENST00000386745 93 ntBASIC-1.21□□□□□ -2.6
CCDC43Q96MW1 SCARNA15.1-201ENST00000516384 125 ntBASIC-1.21□□□□□ -2.6
CCDC43Q96MW1 RNU6-881P-201ENST00000516813 102 ntBASIC-1.21□□□□□ -2.6
CCDC43Q96MW1 RNU6-502P-201ENST00000362419 108 ntBASIC-1.22□□□□□ -2.6
CCDC43Q96MW1 RNU6-75P-201ENST00000515944 104 ntBASIC-1.22□□□□□ -2.6
CCDC43Q96MW1 MIR548X2-201ENST00000579776 100 ntBASIC-1.22□□□□□ -2.6
CCDC43Q96MW1 AC025521.1-201ENST00000621624 286 ntBASIC-1.22□□□□□ -2.6
CCDC43Q96MW1 RNU6-694P-201ENST00000364071 147 ntBASIC-1.23□□□□□ -2.61
CCDC43Q96MW1 RNU6-200P-201ENST00000364743 107 ntBASIC-1.23□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.23□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.580-201ENST00000391004 95 ntBASIC-1.23□□□□□ -2.61
CCDC43Q96MW1 SNORD42B-201ENST00000458893 67 ntBASIC-1.23□□□□□ -2.61
CCDC43Q96MW1 SNORD114-4-201ENST00000363962 75 ntBASIC-1.24□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.24□□□□□ -2.61
CCDC43Q96MW1 SNX3P1X-201ENST00000414887 175 ntBASIC-1.24□□□□□ -2.61
CCDC43Q96MW1 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.24□□□□□ -2.61
CCDC43Q96MW1 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.24□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 RNU4-36P-201ENST00000364294 144 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.488-201ENST00000384403 102 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 RNU6-476P-201ENST00000384726 107 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 MIR518B-201ENST00000385127 83 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 U3.27-201ENST00000391237 200 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 FGF7P7-201ENST00000514120 227 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 MIR4536-1-201ENST00000583537 88 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 MIR5704-201ENST00000584029 77 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 AC025166.1-201ENST00000612411 163 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 MTND5P18-201ENST00000445624 1801 ntBASIC-1.25□□□□□ -2.61
CCDC43Q96MW1 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.8-201ENST00000362353 102 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 RNU6-721P-201ENST00000410155 105 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 RNU6-65P-201ENST00000516332 98 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 RNU6-1061P-201ENST00000516530 99 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 MIR3179-1-201ENST00000578940 84 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 MIR3179-2-201ENST00000579107 84 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 MIR3179-3-201ENST00000579566 84 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 U7.2-201ENST00000607576 63 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 MIR3179-4-201ENST00000617599 84 ntBASIC-1.26□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.29-201ENST00000362570 113 ntBASIC-1.27□□□□□ -2.61
CCDC43Q96MW1 RNU6-463P-201ENST00000384340 107 ntBASIC-1.27□□□□□ -2.61
CCDC43Q96MW1 RNU6-394P-201ENST00000410735 107 ntBASIC-1.27□□□□□ -2.61
CCDC43Q96MW1 MIR577-201ENST00000385196 96 ntBASIC-1.28□□□□□ -2.61
CCDC43Q96MW1 RNA5SP272-201ENST00000516095 111 ntBASIC-1.28□□□□□ -2.61
CCDC43Q96MW1 Y_RNA.700-201ENST00000516806 100 ntBASIC-1.28□□□□□ -2.61
CCDC43Q96MW1 RNU6-379P-201ENST00000363813 104 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 RNU6-804P-201ENST00000384286 107 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 AC004792.1-201ENST00000614523 137 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 MIR4320-201ENST00000636981 65 ntBASIC-1.29□□□□□ -2.62
CCDC43Q96MW1 SNORD58C-201ENST00000365223 64 ntBASIC-1.3□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.3□□□□□ -2.62
CCDC43Q96MW1 SNORD22.1-201ENST00000516331 125 ntBASIC-1.3□□□□□ -2.62
CCDC43Q96MW1 RNU6-388P-201ENST00000517012 105 ntBASIC-1.3□□□□□ -2.62
CCDC43Q96MW1 RNU6-389P-201ENST00000517048 105 ntBASIC-1.3□□□□□ -2.62
CCDC43Q96MW1 SNORD50.2-201ENST00000365465 70 ntBASIC-1.31□□□□□ -2.62
CCDC43Q96MW1 MIR569-201ENST00000385228 96 ntBASIC-1.31□□□□□ -2.62
CCDC43Q96MW1 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-1.31□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.32□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.468-201ENST00000384298 102 ntBASIC-1.32□□□□□ -2.62
CCDC43Q96MW1 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-1.32□□□□□ -2.62
CCDC43Q96MW1 MIR6854-201ENST00000614935 69 ntBASIC-1.32□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.398-201ENST00000383952 99 ntBASIC-1.33□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.400-201ENST00000383963 111 ntBASIC-1.33□□□□□ -2.62
CCDC43Q96MW1 RNU7-85P-201ENST00000458851 63 ntBASIC-1.33□□□□□ -2.62
CCDC43Q96MW1 AL513043.2-201ENST00000573941 143 ntBASIC-1.33□□□□□ -2.62
CCDC43Q96MW1 MIR8068-201ENST00000618032 68 ntBASIC-1.33□□□□□ -2.62
CCDC43Q96MW1 MIR3144-201ENST00000579460 79 ntBASIC-1.34□□□□□ -2.62
CCDC43Q96MW1 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.35□□□□□ -2.63
CCDC43Q96MW1 RNA5SP192-201ENST00000364404 120 ntBASIC-1.35□□□□□ -2.63
CCDC43Q96MW1 SNORD74.6-201ENST00000364796 70 ntBASIC-1.35□□□□□ -2.63
CCDC43Q96MW1 MIR4694-201ENST00000578534 80 ntBASIC-1.35□□□□□ -2.63
CCDC43Q96MW1 MIR3165-201ENST00000579874 75 ntBASIC-1.35□□□□□ -2.63
CCDC43Q96MW1 RNU6-832P-201ENST00000363319 107 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 RNU6-132P-201ENST00000383863 107 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 Y_RNA.630-201ENST00000411370 108 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 AC022137.1-201ENST00000483735 151 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 snoR1.1-201ENST00000628177 80 ntBASIC-1.36□□□□□ -2.63
CCDC43Q96MW1 Y_RNA.309-201ENST00000365046 111 ntBASIC-1.37□□□□□ -2.63
CCDC43Q96MW1 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.37□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 339.2 ms