Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SNORD74.6-201ENST00000364796 70 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 RNU6-867P-201ENST00000364956 107 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 MIR577-201ENST00000385196 96 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 RNA5SP292-201ENST00000390974 118 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 MIR1263-201ENST00000408324 86 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 SNORD2-201ENST00000459163 69 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 SNORD18.2-201ENST00000459604 70 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 RNU6-111P-201ENST00000517179 105 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 AL513043.2-201ENST00000573941 143 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 MIR548AG1-201ENST00000579932 66 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 AL353803.5-201ENST00000599815 141 ntBASIC-0.78□□□□□ -2.53
LMX1AQ8TE12 RNU6-208P-201ENST00000362431 107 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 RNU6-915P-201ENST00000364943 103 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 RNU4-11P-201ENST00000365287 132 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 MIR568-201ENST00000385036 95 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 RNU6-1246P-201ENST00000391064 107 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 snoU13.17-201ENST00000458802 104 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 AC130289.1-201ENST00000577321 73 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 MIR3064-201ENST00000581130 66 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 MIR3128-201ENST00000581957 66 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 MIR548Z-201ENST00000584743 97 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 AL035470.1-201ENST00000622571 220 ntBASIC-0.79□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 SNORA33.1-201ENST00000364957 130 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.350-201ENST00000365409 98 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 MIR8485-201ENST00000401372 91 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 RNU6-274P-201ENST00000459566 107 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 AC021146.9-201ENST00000512503 156 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 YWHAEP3-201ENST00000582767 121 ntBASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-0.8□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 SNORD115-22-201ENST00000364456 82 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNU6-409P-201ENST00000384114 104 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNU6-816P-201ENST00000390914 107 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 U3.27-201ENST00000391237 200 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 AL117351.2-201ENST00000513571 157 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 RNA5SP147-201ENST00000516493 109 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 snoR1.1-201ENST00000628177 80 ntBASIC-0.81□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 SNORA63.2-201ENST00000362603 126 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNU6-797P-201ENST00000363101 109 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNU6-1020P-201ENST00000363684 107 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.244-201ENST00000364484 109 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNA5SP331-201ENST00000364986 107 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNU6-382P-201ENST00000365181 106 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 MIR203A-201ENST00000384836 110 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 SNORD37.2-201ENST00000391075 66 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNA5SP272-201ENST00000516095 111 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 AP002795.1-201ENST00000534879 84 ntBASIC-0.82□□□□□ -2.54
LMX1AQ8TE12 RNU6-824P-201ENST00000363724 104 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 SNORD63.1-201ENST00000516178 80 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 MIR4324-201ENST00000584846 72 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 AC104996.3-201ENST00000590718 94 ntBASIC-0.83□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 SNORD114-4-201ENST00000363962 75 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 RNU6-1177P-201ENST00000391058 104 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 SNORD75.2-201ENST00000408784 58 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 RNA5SP136-201ENST00000410906 107 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 RNY1P9-201ENST00000532431 109 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 AP001094.1-201ENST00000579805 193 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 MIR4536-1-201ENST00000583537 88 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 U6.96-201ENST00000636425 70 ntBASIC-0.84□□□□□ -2.54
LMX1AQ8TE12 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 RNU6-738P-201ENST00000384531 106 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 MIR606-201ENST00000384851 96 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 MIR548A1-201ENST00000385041 97 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 MIR1255B2-201ENST00000408618 67 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 RNA5SP266-201ENST00000410273 108 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 AL158147.1-201ENST00000443970 75 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 SNORD4B-201ENST00000459083 72 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 RNU6-65P-201ENST00000516332 98 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 AC008737.2-201ENST00000599446 118 ntBASIC-0.85□□□□□ -2.55
LMX1AQ8TE12 RNA5SP26-201ENST00000362406 119 ntBASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 RNU6-832P-201ENST00000363319 107 ntBASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 RNU6-682P-201ENST00000363843 106 ntBASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.86□□□□□ -2.55
LMX1AQ8TE12 MTCYBP9-201ENST00000431021 303 ntBASIC-0.86□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 219.2 ms