Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU2-59P-201ENST00000410482 191 ntBASIC1.22□□□□□ -2.21
USHBP1Q8N6Y0 AC074348.1-201ENST00000426503 132 ntBASIC1.22□□□□□ -2.21
USHBP1Q8N6Y0 AC073261.1-201ENST00000429409 121 ntBASIC1.22□□□□□ -2.21
USHBP1Q8N6Y0 SCARNA18B-201ENST00000458806 135 ntBASIC1.22□□□□□ -2.21
USHBP1Q8N6Y0 AC097510.1-201ENST00000510945 133 ntBASIC1.22□□□□□ -2.21
USHBP1Q8N6Y0 RNU6-681P-201ENST00000364012 104 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.371-201ENST00000365591 113 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 SNORD28-201ENST00000384706 75 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 MIR2113-201ENST00000459007 91 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 RNU7-104P-201ENST00000459398 79 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 MIR4639-201ENST00000584938 69 ntBASIC1.21□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-340P-201ENST00000364005 107 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-1126P-201ENST00000384002 107 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 SNORA24B-201ENST00000384176 131 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.565-201ENST00000384719 101 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 MIR216B-201ENST00000390186 82 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 MIR4484-201ENST00000582855 83 ntBASIC1.2□□□□□ -2.22
USHBP1Q8N6Y0 SNORD114-26-201ENST00000363543 72 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.532-201ENST00000384590 113 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 MIR573-201ENST00000384964 99 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.606-201ENST00000410579 103 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 MIR3134-201ENST00000579433 74 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 AC244669.1-204ENST00000621564 178 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.788-201ENST00000622394 112 ntBASIC1.19□□□□□ -2.22
USHBP1Q8N6Y0 MIR617-201ENST00000385030 97 ntBASIC1.18□□□□□ -2.22
USHBP1Q8N6Y0 RNA5SP255-201ENST00000516370 107 ntBASIC1.18□□□□□ -2.22
USHBP1Q8N6Y0 MIR3678-201ENST00000578455 94 ntBASIC1.18□□□□□ -2.22
USHBP1Q8N6Y0 MIR3612-201ENST00000579753 87 ntBASIC1.18□□□□□ -2.22
USHBP1Q8N6Y0 MIR548AG2-201ENST00000581228 64 ntBASIC1.18□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-411P-201ENST00000384451 107 ntBASIC1.17□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.681-201ENST00000516445 113 ntBASIC1.17□□□□□ -2.22
USHBP1Q8N6Y0 MIR4714-201ENST00000580728 77 ntBASIC1.17□□□□□ -2.22
USHBP1Q8N6Y0 MIR6857-201ENST00000613267 93 ntBASIC1.17□□□□□ -2.22
USHBP1Q8N6Y0 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.17□□□□□ -2.22
USHBP1Q8N6Y0 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 RNA5SP325-201ENST00000363756 130 ntBASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-1335P-201ENST00000365426 107 ntBASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-1177P-201ENST00000391058 104 ntBASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 RNU7-74P-201ENST00000459104 62 ntBASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 RNU6-70P-201ENST00000516438 60 ntBASIC1.16□□□□□ -2.22
USHBP1Q8N6Y0 Y_RNA.36-201ENST00000362602 112 ntBASIC1.15□□□□□ -2.23
USHBP1Q8N6Y0 SNORD18A-201ENST00000363753 72 ntBASIC1.15□□□□□ -2.23
USHBP1Q8N6Y0 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
USHBP1Q8N6Y0 SNORD41.1-201ENST00000391000 69 ntBASIC1.15□□□□□ -2.23
USHBP1Q8N6Y0 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.15□□□□□ -2.23
USHBP1Q8N6Y0 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 RNU6-824P-201ENST00000363724 104 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 MIR548L-201ENST00000408303 86 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 OR2A41P-201ENST00000473586 105 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 RNU6-523P-201ENST00000516304 54 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 RNA5SP47-201ENST00000517230 109 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 U6.81-201ENST00000612550 106 ntBASIC1.14□□□□□ -2.23
USHBP1Q8N6Y0 SNORA8.1-201ENST00000384250 140 ntBASIC1.13□□□□□ -2.23
USHBP1Q8N6Y0 MIR519E-201ENST00000385075 84 ntBASIC1.13□□□□□ -2.23
USHBP1Q8N6Y0 RNU6-154P-201ENST00000384306 106 ntBASIC1.12□□□□□ -2.23
USHBP1Q8N6Y0 SNORD99-201ENST00000408612 74 ntBASIC1.12□□□□□ -2.23
USHBP1Q8N6Y0 AC011195.1-201ENST00000578177 177 ntBASIC1.12□□□□□ -2.23
USHBP1Q8N6Y0 RNU6-726P-201ENST00000364680 107 ntBASIC1.11□□□□□ -2.23
USHBP1Q8N6Y0 MIR3675-201ENST00000583661 73 ntBASIC1.11□□□□□ -2.23
USHBP1Q8N6Y0 RNU6-330P-201ENST00000363015 107 ntBASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 MIR548O2-201ENST00000616090 70 ntBASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
USHBP1Q8N6Y0 MIR18A-201ENST00000362310 71 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 Y_RNA.205-201ENST00000364128 113 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 RNU4-45P-201ENST00000365469 141 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 SCARNA16.5-201ENST00000517114 183 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 MIR664A-201ENST00000626086 82 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 MIR4773-1-201ENST00000637203 78 ntBASIC1.09□□□□□ -2.23
USHBP1Q8N6Y0 AC244098.3-201ENST00000424803 96 ntBASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-274P-201ENST00000459566 107 ntBASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-871P-201ENST00000516122 100 ntBASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-687P-201ENST00000516443 89 ntBASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-1015P-201ENST00000517121 99 ntBASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.08□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-382P-201ENST00000365181 106 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-716P-201ENST00000365621 103 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-587P-201ENST00000391282 106 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 AC139453.2-201ENST00000487255 133 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 MIR6828-201ENST00000636181 60 ntBASIC1.07□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-495P-201ENST00000362995 107 ntBASIC1.06□□□□□ -2.24
USHBP1Q8N6Y0 AC093423.1-201ENST00000440817 142 ntBASIC1.06□□□□□ -2.24
USHBP1Q8N6Y0 RNU7-24P-201ENST00000458867 62 ntBASIC1.06□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-752P-201ENST00000516376 102 ntBASIC1.06□□□□□ -2.24
USHBP1Q8N6Y0 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.06□□□□□ -2.24
USHBP1Q8N6Y0 Y_RNA.258-201ENST00000364613 105 ntBASIC1.05□□□□□ -2.24
USHBP1Q8N6Y0 SNORD75.2-201ENST00000408784 58 ntBASIC1.05□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-1187P-201ENST00000364771 110 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 SNORA8.2-201ENST00000384372 139 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-269P-201ENST00000391077 97 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 RNU6-634P-201ENST00000459134 106 ntBASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
USHBP1Q8N6Y0 MIR4460-201ENST00000577862 86 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 351.3 ms