Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC006210.1-201ENST00000424882 111 ntBASIC0.39□□□□□ -2.35
SF3A1Q15459 RNU6-168P-201ENST00000516189 101 ntBASIC0.39□□□□□ -2.35
SF3A1Q15459 MIR548AG2-201ENST00000581228 64 ntBASIC0.39□□□□□ -2.35
SF3A1Q15459 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.39□□□□□ -2.35
SF3A1Q15459 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
SF3A1Q15459 Y_RNA.178-201ENST00000363832 102 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 MIR519E-201ENST00000385075 84 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 RNA5SP484-201ENST00000458857 111 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 RNU6-1057P-201ENST00000517162 102 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 AC069113.3-201ENST00000521019 150 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 NAMPTP3-201ENST00000569273 224 ntBASIC0.38□□□□□ -2.35
SF3A1Q15459 Y_RNA.190-201ENST00000363964 101 ntBASIC0.37□□□□□ -2.35
SF3A1Q15459 Y_RNA.290-201ENST00000364879 114 ntBASIC0.37□□□□□ -2.35
SF3A1Q15459 AC108740.1-201ENST00000498629 225 ntBASIC0.37□□□□□ -2.35
SF3A1Q15459 MIR5706-201ENST00000579841 80 ntBASIC0.37□□□□□ -2.35
SF3A1Q15459 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.37□□□□□ -2.35
SF3A1Q15459 RNU6-905P-201ENST00000384434 107 ntBASIC0.36□□□□□ -2.35
SF3A1Q15459 MIR548U-201ENST00000390728 81 ntBASIC0.36□□□□□ -2.35
SF3A1Q15459 RNA5SP89-201ENST00000410300 108 ntBASIC0.36□□□□□ -2.35
SF3A1Q15459 RNU1-29P-201ENST00000606574 126 ntBASIC0.36□□□□□ -2.35
SF3A1Q15459 RNU6-640P-201ENST00000363693 105 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 RNU1-141P-201ENST00000364623 158 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 RNA5SP128-201ENST00000365305 116 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 MIR216B-201ENST00000390186 82 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 SNORD110-201ENST00000408189 75 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 RNU6-935P-201ENST00000410371 100 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 AC026421.1-201ENST00000519101 163 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 U7.6-201ENST00000610841 64 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 MIR2909-201ENST00000617113 69 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 MALAT1.1-201ENST00000618249 95 ntBASIC0.35□□□□□ -2.35
SF3A1Q15459 Y_RNA.609-201ENST00000410669 89 ntBASIC0.34□□□□□ -2.36
SF3A1Q15459 AC093423.1-201ENST00000440817 142 ntBASIC0.34□□□□□ -2.36
SF3A1Q15459 MIRLET7F1-201ENST00000362202 87 ntBASIC0.33□□□□□ -2.36
SF3A1Q15459 RNU6-811P-201ENST00000384069 107 ntBASIC0.33□□□□□ -2.36
SF3A1Q15459 Y_RNA.433-201ENST00000384089 102 ntBASIC0.33□□□□□ -2.36
SF3A1Q15459 RNA5SP63-201ENST00000391225 112 ntBASIC0.33□□□□□ -2.36
SF3A1Q15459 AC023932.2-201ENST00000603176 175 ntBASIC0.33□□□□□ -2.36
SF3A1Q15459 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.32□□□□□ -2.36
SF3A1Q15459 MIR3064-201ENST00000581130 66 ntBASIC0.32□□□□□ -2.36
SF3A1Q15459 Y_RNA.220-201ENST00000364244 109 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 RNU6-132P-201ENST00000383863 107 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 U3.27-201ENST00000391237 200 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 RNU6-1232P-201ENST00000516299 86 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 MIR4460-201ENST00000577862 86 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 AC104996.3-201ENST00000590718 94 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 MIR499B-201ENST00000636498 73 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 MIR4315-1-201ENST00000636800 73 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 MIR4315-2-201ENST00000640925 73 ntBASIC0.31□□□□□ -2.36
SF3A1Q15459 AC069503.3-201ENST00000618674 145 ntBASIC0.3□□□□□ -2.36
SF3A1Q15459 RNU4-32P-201ENST00000363404 141 ntBASIC0.29□□□□□ -2.36
SF3A1Q15459 Y_RNA.491-201ENST00000384417 107 ntBASIC0.29□□□□□ -2.36
SF3A1Q15459 MIR451A-201ENST00000385059 72 ntBASIC0.29□□□□□ -2.36
SF3A1Q15459 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
SF3A1Q15459 MIR488-201ENST00000365739 83 ntBASIC0.28□□□□□ -2.36
SF3A1Q15459 MIR1236-201ENST00000408340 102 ntBASIC0.28□□□□□ -2.36
SF3A1Q15459 MIR5093-201ENST00000583199 100 ntBASIC0.28□□□□□ -2.36
SF3A1Q15459 SNORD116-22-201ENST00000384430 92 ntBASIC0.27□□□□□ -2.37
SF3A1Q15459 MT-TY-201ENST00000387409 66 ntBASIC0.27□□□□□ -2.37
SF3A1Q15459 RNU6-127P-201ENST00000390897 107 ntBASIC0.27□□□□□ -2.37
SF3A1Q15459 SNORA18.5-201ENST00000516616 101 ntBASIC0.27□□□□□ -2.37
SF3A1Q15459 Y_RNA.694-201ENST00000516677 117 ntBASIC0.27□□□□□ -2.37
SF3A1Q15459 MIR501-201ENST00000390204 84 ntBASIC0.26□□□□□ -2.37
SF3A1Q15459 RNA5SP292-201ENST00000390974 118 ntBASIC0.26□□□□□ -2.37
SF3A1Q15459 Y_RNA.125-201ENST00000363371 111 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 MIR643-201ENST00000385267 97 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 YWHAEP2-201ENST00000580066 112 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 MIR4668-201ENST00000582284 70 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 MIR548O2-201ENST00000616090 70 ntBASIC0.25□□□□□ -2.37
SF3A1Q15459 RNY4P3-201ENST00000365254 95 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 RNY4P30-201ENST00000410216 95 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 MTATP6P29-201ENST00000415057 132 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 HMGN2P22-201ENST00000427588 175 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 MIR548AD-201ENST00000584780 82 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
SF3A1Q15459 SNORA63.2-201ENST00000362603 126 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 RNY1P7-201ENST00000384743 110 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 RNU6-1052P-201ENST00000411398 104 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 FGF7P7-201ENST00000514120 227 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 SNORA25.13-201ENST00000516395 103 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 RNA5SP395-201ENST00000516567 118 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 RNU6-719P-201ENST00000516671 104 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 MIR4473-201ENST00000583731 91 ntBASIC0.23□□□□□ -2.37
SF3A1Q15459 RNU6-633P-201ENST00000362612 103 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 RNU6-1051P-201ENST00000365471 102 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 RNU6-652P-201ENST00000365488 107 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 MIR519C-201ENST00000385053 87 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 RNU5B-6P-201ENST00000516765 68 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 RNU6-844P-201ENST00000517175 102 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 MIR4677-201ENST00000584153 80 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 MIR6718-201ENST00000616153 80 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 uc_338.10-201ENST00000621872 182 ntBASIC0.22□□□□□ -2.37
SF3A1Q15459 RNU6-1131P-201ENST00000364955 107 ntBASIC0.21□□□□□ -2.38
SF3A1Q15459 Y_RNA.620-201ENST00000411009 88 ntBASIC0.21□□□□□ -2.38
SF3A1Q15459 RNA5SP285-201ENST00000516619 119 ntBASIC0.21□□□□□ -2.38
SF3A1Q15459 MIR4796-201ENST00000580742 81 ntBASIC0.21□□□□□ -2.38
SF3A1Q15459 RNU6V-201ENST00000384105 107 ntBASIC0.2□□□□□ -2.38
SF3A1Q15459 RNU6-49P-201ENST00000384256 107 ntBASIC0.19□□□□□ -2.38
SF3A1Q15459 MIR610-201ENST00000385139 96 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 215.1 ms