Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 MIR520F-201ENST00000384824 87 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 MIR30A-201ENST00000385092 71 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 RNU6-994P-201ENST00000410507 111 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 RNU6-231P-201ENST00000517122 103 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 RMST_2.1-201ENST00000617263 136 ntBASIC1.93□□□□□ -2.1
FOXC1Q12948 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
FOXC1Q12948 MIR6073-201ENST00000352083 89 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 SNORA7.1-201ENST00000363750 139 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 RNU6-726P-201ENST00000364680 107 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 SNORA33.1-201ENST00000364957 130 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 MIR144-201ENST00000384886 86 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 MIR644A-201ENST00000385262 94 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 SNORA48.3-201ENST00000391081 134 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 MIR1827-201ENST00000408549 66 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 RNU7-90P-201ENST00000459216 62 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 AC002350.1-201ENST00000490759 375 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 RNU6-135P-201ENST00000516769 101 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 AC244669.1-204ENST00000621564 178 ntBASIC1.92□□□□□ -2.1
FOXC1Q12948 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXC1Q12948 Y_RNA.325-201ENST00000365171 122 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 MIR524-201ENST00000385242 87 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 AC003989.2-201ENST00000440224 169 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 SNORD79.1-201ENST00000516069 84 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 RNA5SP82-201ENST00000516707 92 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 RN7SKP88-201ENST00000516847 250 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 7SK.8-201ENST00000612110 250 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 7SK.11-201ENST00000615477 250 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 MIR6734-201ENST00000621166 68 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 7SK.13-201ENST00000622040 250 ntBASIC1.91□□□□□ -2.1
FOXC1Q12948 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
FOXC1Q12948 SNORA67.1-201ENST00000364749 141 ntBASIC1.9□□□□□ -2.11
FOXC1Q12948 RNU5B-6P-201ENST00000516765 68 ntBASIC1.9□□□□□ -2.11
FOXC1Q12948 MIR4287-201ENST00000579398 78 ntBASIC1.9□□□□□ -2.11
FOXC1Q12948 MIR8081-201ENST00000611533 95 ntBASIC1.9□□□□□ -2.11
FOXC1Q12948 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
FOXC1Q12948 Y_RNA.246-201ENST00000364495 108 ntBASIC1.89□□□□□ -2.11
FOXC1Q12948 SNORA40.16-201ENST00000517238 121 ntBASIC1.89□□□□□ -2.11
FOXC1Q12948 AC084768.2-201ENST00000622736 221 ntBASIC1.89□□□□□ -2.11
FOXC1Q12948 Y_RNA.540-201ENST00000384638 111 ntBASIC1.88□□□□□ -2.11
FOXC1Q12948 AL137847.3-201ENST00000611521 109 ntBASIC1.88□□□□□ -2.11
FOXC1Q12948 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
FOXC1Q12948 RNU6-910P-201ENST00000390844 107 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.87□□□□□ -2.11
FOXC1Q12948 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 SNORA44.1-201ENST00000517031 108 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 MIR548X-201ENST00000580069 75 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 MIR4303-201ENST00000581299 66 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 MIR6895-201ENST00000613497 78 ntBASIC1.87□□□□□ -2.11
FOXC1Q12948 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.86□□□□□ -2.11
FOXC1Q12948 SNORA8.2-201ENST00000384372 139 ntBASIC1.86□□□□□ -2.11
FOXC1Q12948 MIR517C-201ENST00000385103 95 ntBASIC1.86□□□□□ -2.11
FOXC1Q12948 RNA5SP47-201ENST00000517230 109 ntBASIC1.86□□□□□ -2.11
FOXC1Q12948 MIR6504-201ENST00000613520 61 ntBASIC1.86□□□□□ -2.11
FOXC1Q12948 MIR6779-201ENST00000617283 64 ntBASIC1.86□□□□□ -2.11
FOXC1Q12948 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
FOXC1Q12948 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
FOXC1Q12948 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
FOXC1Q12948 MIR758-201ENST00000390227 88 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 TRGJP-201ENST00000390338 61 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
FOXC1Q12948 RNU6-1246P-201ENST00000391064 107 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 RNU6-269P-201ENST00000391077 97 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 RNU1-78P-201ENST00000391248 165 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 MIR1276-201ENST00000408707 83 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 RNA5SP220-201ENST00000516298 104 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.85□□□□□ -2.11
FOXC1Q12948 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
FOXC1Q12948 Y_RNA.327-201ENST00000365201 102 ntBASIC1.84□□□□□ -2.11
FOXC1Q12948 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.84□□□□□ -2.11
FOXC1Q12948 SNORD18A-201ENST00000363753 72 ntBASIC1.83□□□□□ -2.12
FOXC1Q12948 SNORA63.6-201ENST00000364921 119 ntBASIC1.83□□□□□ -2.12
FOXC1Q12948 SNORD116-16-201ENST00000384533 92 ntBASIC1.83□□□□□ -2.12
FOXC1Q12948 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.83□□□□□ -2.12
FOXC1Q12948 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
FOXC1Q12948 SNORA67.5-201ENST00000391036 107 ntBASIC1.82□□□□□ -2.12
FOXC1Q12948 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.82□□□□□ -2.12
FOXC1Q12948 RNA5SP484-201ENST00000458857 111 ntBASIC1.82□□□□□ -2.12
FOXC1Q12948 RNU7-95P-201ENST00000459222 64 ntBASIC1.82□□□□□ -2.12
FOXC1Q12948 AC079804.2-201ENST00000490376 200 ntBASIC1.82□□□□□ -2.12
FOXC1Q12948 SCARNA17.3-201ENST00000516381 125 ntBASIC1.82□□□□□ -2.12
FOXC1Q12948 Y_RNA.74-201ENST00000362911 99 ntBASIC1.81□□□□□ -2.12
FOXC1Q12948 SNORD114-26-201ENST00000363543 72 ntBASIC1.81□□□□□ -2.12
FOXC1Q12948 MIR582-201ENST00000365731 98 ntBASIC1.81□□□□□ -2.12
FOXC1Q12948 RNU1-40P-201ENST00000516816 164 ntBASIC1.81□□□□□ -2.12
FOXC1Q12948 RNU1-97P-201ENST00000516872 164 ntBASIC1.81□□□□□ -2.12
FOXC1Q12948 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.81□□□□□ -2.12
FOXC1Q12948 SNORA9.1-201ENST00000362412 131 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 MIR9-3-201ENST00000385084 90 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 MIR652-201ENST00000385278 98 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 SNORD116.2-201ENST00000391251 93 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 MIR548L-201ENST00000408303 86 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 AL162376.1-201ENST00000624117 175 ntBASIC1.8□□□□□ -2.12
FOXC1Q12948 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
FOXC1Q12948 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
FOXC1Q12948 SNORA25.8-201ENST00000364831 128 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 RNU6-716P-201ENST00000365621 103 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 MIR17-201ENST00000385012 84 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.79□□□□□ -2.12
FOXC1Q12948 MIR3198-2-201ENST00000577868 80 ntBASIC1.79□□□□□ -2.12
FOXC1Q12948 MIR5694-201ENST00000581190 76 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms