Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC073261.1-201ENST00000429409 121 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.07□□□□□ -2.24
COL4A3Q01955 SCARNA18B-201ENST00000458806 135 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 RNU6-1110P-201ENST00000516462 101 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 RNU6-807P-201ENST00000516805 107 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 RNU6-1057P-201ENST00000517162 102 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 MIR4698-201ENST00000577795 80 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 MIR4295-201ENST00000585286 85 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
COL4A3Q01955 FABP5P4-201ENST00000437203 171 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 MIR3140-201ENST00000583685 90 ntBASIC1.07□□□□□ -2.24
COL4A3Q01955 Y_RNA.545-201ENST00000384652 105 ntBASIC1.06□□□□□ -2.24
COL4A3Q01955 RNU6ATAC4P-201ENST00000387446 126 ntBASIC1.06□□□□□ -2.24
COL4A3Q01955 MIR936-201ENST00000401264 98 ntBASIC1.06□□□□□ -2.24
COL4A3Q01955 AC002350.1-201ENST00000490759 375 ntBASIC1.06□□□□□ -2.24
COL4A3Q01955 SNORD115-24-201ENST00000363528 82 ntBASIC1.05□□□□□ -2.24
COL4A3Q01955 RNU6-681P-201ENST00000364012 104 ntBASIC1.05□□□□□ -2.24
COL4A3Q01955 Y_RNA.565-201ENST00000384719 101 ntBASIC1.05□□□□□ -2.24
COL4A3Q01955 RNU6-303P-201ENST00000517091 106 ntBASIC1.05□□□□□ -2.24
COL4A3Q01955 RNU5F-1-201ENST00000362507 117 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 SNORD105-201ENST00000386910 85 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 U3.27-201ENST00000391237 200 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 MIR6513-201ENST00000621188 64 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 MIR19B1-201ENST00000384829 87 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 MIR150-201ENST00000385048 84 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 RNU6-935P-201ENST00000410371 100 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 RNU2-59P-201ENST00000410482 191 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 RNU6-1265P-201ENST00000516342 103 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 RNU7-13P-201ENST00000516413 62 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 RNU6-70P-201ENST00000516438 60 ntBASIC1.04□□□□□ -2.24
COL4A3Q01955 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.03□□□□□ -2.24
COL4A3Q01955 SNORD115-44-201ENST00000365391 82 ntBASIC1.03□□□□□ -2.24
COL4A3Q01955 SNORD26-201ENST00000384147 75 ntBASIC1.03□□□□□ -2.24
COL4A3Q01955 MIR3134-201ENST00000579433 74 ntBASIC1.03□□□□□ -2.24
COL4A3Q01955 AC067863.3-201ENST00000624172 122 ntBASIC1.03□□□□□ -2.24
COL4A3Q01955 MIR200A-201ENST00000384875 90 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 MIR451A-201ENST00000385059 72 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 MIR644A-201ENST00000385262 94 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 MIR1265-201ENST00000408444 86 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 AC074348.1-201ENST00000426503 132 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 AC097510.1-201ENST00000510945 133 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.02□□□□□ -2.25
COL4A3Q01955 RNU6-340P-201ENST00000364005 107 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 MIR532-201ENST00000385025 91 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 MIR942-201ENST00000401111 86 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 RNU7-161P-201ENST00000517289 62 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 MIR3920-201ENST00000581751 86 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 AC025627.3-201ENST00000582078 182 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 MIR4484-201ENST00000582855 83 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 Y_RNA.788-201ENST00000622394 112 ntBASIC1.01□□□□□ -2.25
COL4A3Q01955 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
COL4A3Q01955 Y_RNA.32-201ENST00000362589 110 ntBASIC1□□□□□ -2.25
COL4A3Q01955 RNA5SP403-201ENST00000363598 108 ntBASIC1□□□□□ -2.25
COL4A3Q01955 SNORA25.8-201ENST00000364831 128 ntBASIC1□□□□□ -2.25
COL4A3Q01955 RNU6-411P-201ENST00000384451 107 ntBASIC1□□□□□ -2.25
COL4A3Q01955 AC139453.2-201ENST00000487255 133 ntBASIC1□□□□□ -2.25
COL4A3Q01955 SNORA8.1-201ENST00000384250 140 ntBASIC1□□□□□ -2.25
COL4A3Q01955 MIR216B-201ENST00000390186 82 ntBASIC1□□□□□ -2.25
COL4A3Q01955 Y_RNA.606-201ENST00000410579 103 ntBASIC1□□□□□ -2.25
COL4A3Q01955 MIR2113-201ENST00000459007 91 ntBASIC1□□□□□ -2.25
COL4A3Q01955 RNU6-469P-201ENST00000516253 101 ntBASIC1□□□□□ -2.25
COL4A3Q01955 RNU6-135P-201ENST00000516769 101 ntBASIC1□□□□□ -2.25
COL4A3Q01955 RNA5SP404-201ENST00000517118 132 ntBASIC1□□□□□ -2.25
COL4A3Q01955 Y_RNA.532-201ENST00000384590 113 ntBASIC0.99□□□□□ -2.25
COL4A3Q01955 MIR617-201ENST00000385030 97 ntBASIC0.99□□□□□ -2.25
COL4A3Q01955 RNU6-523P-201ENST00000516304 54 ntBASIC0.99□□□□□ -2.25
COL4A3Q01955 MIR3675-201ENST00000583661 73 ntBASIC0.99□□□□□ -2.25
COL4A3Q01955 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
COL4A3Q01955 RNU6-1126P-201ENST00000384002 107 ntBASIC0.98□□□□□ -2.25
COL4A3Q01955 SNORA24B-201ENST00000384176 131 ntBASIC0.98□□□□□ -2.25
COL4A3Q01955 RNU6-1177P-201ENST00000391058 104 ntBASIC0.98□□□□□ -2.25
COL4A3Q01955 SNORD124-201ENST00000459577 104 ntBASIC0.98□□□□□ -2.25
COL4A3Q01955 AC244669.1-204ENST00000621564 178 ntBASIC0.98□□□□□ -2.25
COL4A3Q01955 SNORD28-201ENST00000384706 75 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
COL4A3Q01955 MIR4723-201ENST00000585070 81 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 MIR26B-201ENST00000362251 77 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 SNORD114-24-201ENST00000365029 72 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
COL4A3Q01955 RNU7-104P-201ENST00000459398 79 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 MIR3678-201ENST00000578455 94 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 MIR4639-201ENST00000584938 69 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 MIR664A-201ENST00000626086 82 ntBASIC0.97□□□□□ -2.25
COL4A3Q01955 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.97□□□□□ -2.25
COL4A3Q01955 RNU6-824P-201ENST00000363724 104 ntBASIC0.96□□□□□ -2.26
COL4A3Q01955 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
COL4A3Q01955 RNA5SP25-201ENST00000410815 110 ntBASIC0.96□□□□□ -2.26
COL4A3Q01955 RNU6-1015P-201ENST00000517121 99 ntBASIC0.96□□□□□ -2.26
COL4A3Q01955 MIR4636-201ENST00000582271 80 ntBASIC0.96□□□□□ -2.26
COL4A3Q01955 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.96□□□□□ -2.26
COL4A3Q01955 RNU7-74P-201ENST00000459104 62 ntBASIC0.95□□□□□ -2.26
COL4A3Q01955 MIR548AG2-201ENST00000581228 64 ntBASIC0.95□□□□□ -2.26
COL4A3Q01955 AC103810.9-201ENST00000606688 112 ntBASIC0.95□□□□□ -2.26
COL4A3Q01955 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
COL4A3Q01955 RNU6-330P-201ENST00000363015 107 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 RNU6-587P-201ENST00000391282 106 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 MIR548L-201ENST00000408303 86 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 RNA5SP255-201ENST00000516370 107 ntBASIC0.94□□□□□ -2.26
COL4A3Q01955 RNU6-687P-201ENST00000516443 89 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 253.4 ms