Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MIR371B-201ENST00000638082 66 ntBASIC-0.09□□□□□ -2.42
HOXC11O43248 RNU6-644P-201ENST00000391155 98 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 AC104692.1-201ENST00000472406 90 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 RNU6-65P-201ENST00000516332 98 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 MIR4536-1-201ENST00000583537 88 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 uc_338.10-201ENST00000621872 182 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 MIR6514-201ENST00000622549 70 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 MIR1295B-201ENST00000636144 60 ntBASIC-0.1□□□□□ -2.43
HOXC11O43248 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 Y_RNA.68-201ENST00000362881 102 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 MIR329-2-201ENST00000385029 84 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 RNU6-1154P-201ENST00000391001 104 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 AL603908.1-201ENST00000406098 201 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC-0.11□□□□□ -2.43
HOXC11O43248 SCARNA23-201ENST00000516060 130 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 RNU6-479P-201ENST00000516348 105 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 RNA5SP285-201ENST00000516619 119 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.11□□□□□ -2.43
HOXC11O43248 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 MIR451A-201ENST00000385059 72 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 MIR216B-201ENST00000390186 82 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 RNU7-188P-201ENST00000517063 64 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 RNU6-537P-201ENST00000517277 103 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 RN7SL660P-201ENST00000614852 299 ntBASIC-0.12□□□□□ -2.43
HOXC11O43248 RNU6-834P-201ENST00000362367 110 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 SNORD113-1-201ENST00000365321 69 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-132P-201ENST00000383863 107 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-1056P-201ENST00000383996 107 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6V-201ENST00000384105 107 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-106P-201ENST00000384405 107 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 SNORA19-201ENST00000384737 128 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 MIR106A-201ENST00000384870 81 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 MIR590-201ENST00000385008 97 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-554P-201ENST00000410466 106 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-313P-201ENST00000516317 112 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-589P-201ENST00000516485 107 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 CR383656.4-201ENST00000546909 122 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 MIR548O2-201ENST00000616090 70 ntBASIC-0.13□□□□□ -2.43
HOXC11O43248 RNU6-154P-201ENST00000384306 106 ntBASIC-0.14□□□□□ -2.43
HOXC11O43248 MIR1302-5-201ENST00000408164 150 ntBASIC-0.14□□□□□ -2.43
HOXC11O43248 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.14□□□□□ -2.43
HOXC11O43248 SNORD4B-201ENST00000459083 72 ntBASIC-0.15□□□□□ -2.43
HOXC11O43248 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.15□□□□□ -2.43
HOXC11O43248 Y_RNA.705-201ENST00000516862 110 ntBASIC-0.15□□□□□ -2.43
HOXC11O43248 MIR6759-201ENST00000638110 65 ntBASIC-0.15□□□□□ -2.43
HOXC11O43248 MIR148A-201ENST00000362215 68 ntBASIC-0.16□□□□□ -2.44
HOXC11O43248 RNU2-51P-201ENST00000410708 197 ntBASIC-0.16□□□□□ -2.44
HOXC11O43248 MIR3064-201ENST00000581130 66 ntBASIC-0.16□□□□□ -2.44
HOXC11O43248 SNORD114-29-201ENST00000364819 70 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 SNORD58A-201ENST00000383875 65 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 MIR652-201ENST00000385278 98 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 RNU6-972P-201ENST00000391208 107 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
HOXC11O43248 RNU6-519P-201ENST00000410590 108 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 RNU6-887P-201ENST00000410660 100 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 RNU6-175P-201ENST00000516896 107 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-0.17□□□□□ -2.44
HOXC11O43248 RNU6-54P-201ENST00000365563 107 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 U3.27-201ENST00000391237 200 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 FGF7P7-201ENST00000514120 227 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU7-61P-201ENST00000515897 61 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU6-109P-201ENST00000516364 107 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU6-184P-201ENST00000516514 107 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU6-719P-201ENST00000516671 104 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 Y_RNA.709-201ENST00000516952 92 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 AC104996.3-201ENST00000590718 94 ntBASIC-0.18□□□□□ -2.44
HOXC11O43248 RNU6-46P-201ENST00000383860 107 ntBASIC-0.19□□□□□ -2.44
HOXC11O43248 MIR548U-201ENST00000390728 81 ntBASIC-0.19□□□□□ -2.44
HOXC11O43248 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.19□□□□□ -2.44
HOXC11O43248 Y_RNA.96-201ENST00000363092 109 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 Y_RNA.107-201ENST00000363190 121 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 Y_RNA.273-201ENST00000364703 102 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 RNU6-1113P-201ENST00000384348 107 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 RNA5SP292-201ENST00000390974 118 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 AL606753.1-201ENST00000427435 87 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 Y_RNA.818-201ENST00000618813 71 ntBASIC-0.2□□□□□ -2.44
HOXC11O43248 RNU6-811P-201ENST00000384069 107 ntBASIC-0.21□□□□□ -2.44
HOXC11O43248 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.21□□□□□ -2.44
HOXC11O43248 RNU6-762P-201ENST00000517107 102 ntBASIC-0.21□□□□□ -2.44
HOXC11O43248 MIR3140-201ENST00000583685 90 ntBASIC-0.21□□□□□ -2.44
HOXC11O43248 MIR6507-201ENST00000613630 70 ntBASIC-0.21□□□□□ -2.44
HOXC11O43248 MIR20A-201ENST00000362279 71 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 RNU6-766P-201ENST00000362478 107 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 SNORA63.2-201ENST00000362603 126 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 Y_RNA.93-201ENST00000363066 109 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 SNORD116-10-201ENST00000363791 102 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.22□□□□□ -2.44
HOXC11O43248 RNA5SP98-201ENST00000363158 137 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 SNORD114-12-201ENST00000365400 75 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 AC244250.2-201ENST00000418731 148 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 AC244090.1-201ENST00000441884 93 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 SNORD42B-201ENST00000458893 67 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 AC026421.1-201ENST00000519101 163 ntBASIC-0.23□□□□□ -2.45
HOXC11O43248 SNORA18.1-201ENST00000363418 128 ntBASIC-0.24□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms