Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR4287-201ENST00000579398 78 ntBASIC1.99□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR3937-201ENST00000580135 106 ntBASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR3920-201ENST00000581751 86 ntBASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AC027335.2-201ENST00000624030 375 ntBASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 MIR924-201ENST00000638017 53 ntBASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-495P-201ENST00000362995 107 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 SNORD1A-201ENST00000364968 72 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-1039P-201ENST00000383931 107 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 SNORA44.1-201ENST00000517031 108 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 RNU6-165P-201ENST00000517170 99 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 AC106800.4-201ENST00000614905 153 ntBASIC1.97□□□□□ -2.09
SENP3-EIF4A1A0A087X0R7 Y_RNA.375-201ENST00000365625 101 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU7-102P-201ENST00000458948 62 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU7-40P-201ENST00000516397 64 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR5000-201ENST00000577717 103 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR6509-201ENST00000614603 85 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 AC073869.9-201ENST00000641610 120 ntBASIC1.96□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU6-1335P-201ENST00000365426 107 ntBASIC1.94□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 VTRNA1-3-201ENST00000365645 89 ntBASIC1.94□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU6-1126P-201ENST00000384002 107 ntBASIC1.94□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 AC092634.7-201ENST00000621022 103 ntBASIC1.94□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU6-940P-201ENST00000363433 104 ntBASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR617-201ENST00000385030 97 ntBASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR30A-201ENST00000385092 71 ntBASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 SNORA75.2-201ENST00000391138 150 ntBASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 SNORA75.3-201ENST00000391231 150 ntBASIC1.93□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU6-829P-201ENST00000363700 112 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 Y_RNA.174-201ENST00000363781 105 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 SNORA25.5-201ENST00000363782 126 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 AC048334.1-201ENST00000477975 159 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 AL512310.8-201ENST00000550183 120 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR4299-201ENST00000577899 72 ntBASIC1.92□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 SNORD115-24-201ENST00000363528 82 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNA5SP403-201ENST00000363598 108 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 Y_RNA.236-201ENST00000364427 111 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU1-119P-201ENST00000391122 165 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 RNU6-994P-201ENST00000410507 111 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR4804-201ENST00000581683 73 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 MIR6767-201ENST00000637302 66 ntBASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.91□□□□□ -2.1
SENP3-EIF4A1A0A087X0R7 AL591704.2-201ENST00000421658 181 ntBASIC1.9□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 AC023827.1-201ENST00000569247 97 ntBASIC1.9□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 NAMPTP3-201ENST00000569273 224 ntBASIC1.9□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR548AG2-201ENST00000581228 64 ntBASIC1.9□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR548O2-201ENST00000616090 70 ntBASIC1.9□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU6-1079P-201ENST00000362861 110 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU6-716P-201ENST00000365621 103 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SNORA31.2-201ENST00000516019 134 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SNORA31.24-201ENST00000517232 57 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR466-201ENST00000580653 84 ntBASIC1.89□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU6-645P-201ENST00000364649 106 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR203A-201ENST00000384836 110 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 AC067940.1-201ENST00000458411 300 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-56P-201ENST00000458744 62 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SCARNA21.1-201ENST00000515996 128 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SNORA31.14-201ENST00000516728 116 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RN7SKP88-201ENST00000516847 250 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 7SK.8-201ENST00000612110 250 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 7SK.11-201ENST00000615477 250 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 7SK.13-201ENST00000622040 250 ntBASIC1.88□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 Y_RNA.32-201ENST00000362589 110 ntBASIC1.87□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNA5SP192-201ENST00000364404 120 ntBASIC1.87□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR676-201ENST00000390702 67 ntBASIC1.87□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR3657-201ENST00000584818 117 ntBASIC1.87□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 uc_338.16-201ENST00000621804 95 ntBASIC1.87□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU6-260P-201ENST00000384092 107 ntBASIC1.86□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR100-201ENST00000385259 80 ntBASIC1.86□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-161P-201ENST00000517289 62 ntBASIC1.86□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNA5SP215-201ENST00000363440 122 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SNORA80D-201ENST00000384488 135 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR517C-201ENST00000385103 95 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-74P-201ENST00000459104 62 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-104P-201ENST00000459398 79 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-21P-201ENST00000459430 62 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 AC067863.3-201ENST00000624172 122 ntBASIC1.85□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR1-1-201ENST00000362147 71 ntBASIC1.84□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU6-369P-201ENST00000362515 102 ntBASIC1.84□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 MIR519E-201ENST00000385075 84 ntBASIC1.84□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.84□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 RNU7-90P-201ENST00000459216 62 ntBASIC1.84□□□□□ -2.11
SENP3-EIF4A1A0A087X0R7 SNORA2.1-201ENST00000363089 137 ntBASIC1.83□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-54P-201ENST00000365563 107 ntBASIC1.83□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR222-201ENST00000384992 110 ntBASIC1.83□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNA5SP299-201ENST00000391203 116 ntBASIC1.83□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR3198-2-201ENST00000577868 80 ntBASIC1.83□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 RNU6-302P-201ENST00000365249 107 ntBASIC1.82□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 Y_RNA.363-201ENST00000365529 113 ntBASIC1.82□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR520F-201ENST00000384824 87 ntBASIC1.82□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 Y_RNA.722-201ENST00000517279 114 ntBASIC1.82□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 AC068338.1-201ENST00000565567 176 ntBASIC1.82□□□□□ -2.12
SENP3-EIF4A1A0A087X0R7 MIR8087-201ENST00000612745 78 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 192.2 ms