Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNU4ATAC4P-201ENST00000516307 126 ntBASIC2.25□□□□□ -2.05
VPS9D1Q9Y2B5 SNORD53-201ENST00000579969 78 ntBASIC2.25□□□□□ -2.05
VPS9D1Q9Y2B5 MIR6840-201ENST00000611937 71 ntBASIC2.25□□□□□ -2.05
VPS9D1Q9Y2B5 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.25□□□□□ -2.05
VPS9D1Q9Y2B5 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
VPS9D1Q9Y2B5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
VPS9D1Q9Y2B5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
VPS9D1Q9Y2B5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
VPS9D1Q9Y2B5 MIR1-1-201ENST00000362147 71 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 SNORA15B-2-201ENST00000384058 135 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 SNORA15B-1-201ENST00000384334 135 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 MIR520F-201ENST00000384824 87 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 AL591704.2-201ENST00000421658 181 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 SNORA31.2-201ENST00000516019 134 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 RNA5SP200-201ENST00000516360 103 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 AL512310.8-201ENST00000550183 120 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 AL136317.1-201ENST00000612653 226 ntBASIC2.23□□□□□ -2.05
VPS9D1Q9Y2B5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 SNORA70B-201ENST00000384210 135 ntBASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 SNORD41.1-201ENST00000391000 69 ntBASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 RNU6ATAC29P-201ENST00000408088 125 ntBASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 RNU6-231P-201ENST00000517122 103 ntBASIC2.22□□□□□ -2.05
VPS9D1Q9Y2B5 RNA5SP432-201ENST00000362480 116 ntBASIC2.21□□□□□ -2.06
VPS9D1Q9Y2B5 SNORA41B-201ENST00000384785 128 ntBASIC2.21□□□□□ -2.06
VPS9D1Q9Y2B5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS9D1Q9Y2B5 AC104984.5-201ENST00000586878 94 ntBASIC2.21□□□□□ -2.06
VPS9D1Q9Y2B5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
VPS9D1Q9Y2B5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS9D1Q9Y2B5 Y_RNA.363-201ENST00000365529 113 ntBASIC2.2□□□□□ -2.06
VPS9D1Q9Y2B5 RNU7-21P-201ENST00000459430 62 ntBASIC2.2□□□□□ -2.06
VPS9D1Q9Y2B5 Y_RNA.125-201ENST00000363371 111 ntBASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 MIR221-201ENST00000385135 110 ntBASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 MIR548L-201ENST00000408303 86 ntBASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 AC104435.1-201ENST00000483483 166 ntBASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 RNU6-135P-201ENST00000516769 101 ntBASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS9D1Q9Y2B5 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 SNORA7.1-201ENST00000363750 139 ntBASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 Y_RNA.246-201ENST00000364495 108 ntBASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 RNU1-141P-201ENST00000364623 158 ntBASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 RNU4-53P-201ENST00000410828 140 ntBASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 AL356320.1-201ENST00000429616 163 ntBASIC2.18□□□□□ -2.06
VPS9D1Q9Y2B5 SNORA33.1-201ENST00000364957 130 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 RNA5SP37-201ENST00000365420 130 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 MIR934-201ENST00000401241 83 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 MIR548F3-201ENST00000408509 87 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 RN7SKP88-201ENST00000516847 250 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 MIR4287-201ENST00000579398 78 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 MIR4639-201ENST00000584938 69 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 7SK.8-201ENST00000612110 250 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 7SK.11-201ENST00000615477 250 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 AC244669.1-204ENST00000621564 178 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 7SK.13-201ENST00000622040 250 ntBASIC2.17□□□□□ -2.06
VPS9D1Q9Y2B5 Y_RNA.325-201ENST00000365171 122 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 SNORA80D-201ENST00000384488 135 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 Y_RNA.633-201ENST00000459107 95 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 RNU7-90P-201ENST00000459216 62 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 RNU5B-6P-201ENST00000516765 68 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.16□□□□□ -2.06
VPS9D1Q9Y2B5 MIR30A-201ENST00000385092 71 ntBASIC2.15□□□□□ -2.07
VPS9D1Q9Y2B5 MIR644A-201ENST00000385262 94 ntBASIC2.15□□□□□ -2.07
VPS9D1Q9Y2B5 SNORD116.2-201ENST00000391251 93 ntBASIC2.15□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA44.1-201ENST00000517031 108 ntBASIC2.15□□□□□ -2.07
VPS9D1Q9Y2B5 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC2.15□□□□□ -2.07
VPS9D1Q9Y2B5 SNORD28-201ENST00000384706 75 ntBASIC2.14□□□□□ -2.07
VPS9D1Q9Y2B5 RN7SKP223-201ENST00000410582 62 ntBASIC2.14□□□□□ -2.07
VPS9D1Q9Y2B5 MIR6873-201ENST00000622788 63 ntBASIC2.14□□□□□ -2.07
VPS9D1Q9Y2B5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS9D1Q9Y2B5 MIR758-201ENST00000390227 88 ntBASIC2.13□□□□□ -2.07
VPS9D1Q9Y2B5 AC079804.2-201ENST00000490376 200 ntBASIC2.13□□□□□ -2.07
VPS9D1Q9Y2B5 MIR548X-201ENST00000580069 75 ntBASIC2.13□□□□□ -2.07
VPS9D1Q9Y2B5 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VPS9D1Q9Y2B5 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VPS9D1Q9Y2B5 AC002350.1-201ENST00000490759 375 ntBASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 RNU6-469P-201ENST00000516253 101 ntBASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA40.16-201ENST00000517238 121 ntBASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 MIR4299-201ENST00000577899 72 ntBASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 RMST_2.1-201ENST00000617263 136 ntBASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
VPS9D1Q9Y2B5 RNU6-726P-201ENST00000364680 107 ntBASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 MIR1827-201ENST00000408549 66 ntBASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 snoU13.26-201ENST00000459452 105 ntBASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 RNU1-40P-201ENST00000516816 164 ntBASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 RNU1-97P-201ENST00000516872 164 ntBASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA9.1-201ENST00000362412 131 ntBASIC2.1□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA25.8-201ENST00000364831 128 ntBASIC2.1□□□□□ -2.07
VPS9D1Q9Y2B5 SNORA63.6-201ENST00000364921 119 ntBASIC2.1□□□□□ -2.07
VPS9D1Q9Y2B5 MIR7110-201ENST00000612638 86 ntBASIC2.1□□□□□ -2.07
VPS9D1Q9Y2B5 AP000553.5-201ENST00000641933 54 ntBASIC2.1□□□□□ -2.07
VPS9D1Q9Y2B5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
VPS9D1Q9Y2B5 RNU4-52P-201ENST00000384209 138 ntBASIC2.09□□□□□ -2.07
VPS9D1Q9Y2B5 RNU6-910P-201ENST00000390844 107 ntBASIC2.09□□□□□ -2.07
VPS9D1Q9Y2B5 HMGN2P38-201ENST00000423806 265 ntBASIC2.09□□□□□ -2.07
VPS9D1Q9Y2B5 snoU13.15-201ENST00000459407 104 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 247.4 ms