Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNORA51.5-201ENST00000384126 131 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 RPS29P8-201ENST00000445109 171 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 RNU7-188P-201ENST00000517063 64 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 AL162726.3-218ENST00000636401 95 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 MIR4788-201ENST00000639104 80 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 RNA5SP275-201ENST00000363936 118 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 SNORD14C-201ENST00000365382 88 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 MIR224-201ENST00000384889 81 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 AL353813.1-201ENST00000440700 253 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 MIR548AE1-201ENST00000583292 70 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 MIR4263-201ENST00000584745 83 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 FTX_2.1-201ENST00000618816 94 ntBASIC-0.43□□□□□ -2.48
DDX28Q9NUL7 RNU6-886P-201ENST00000384319 105 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 MT-TY-201ENST00000387409 66 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 AC096531.1-201ENST00000419107 107 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 AL161932.1-201ENST00000437408 146 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 AC025166.1-201ENST00000612411 163 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.44□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.45□□□□□ -2.48
DDX28Q9NUL7 SNORD114-29-201ENST00000364819 70 ntBASIC-0.45□□□□□ -2.48
DDX28Q9NUL7 AL590491.3-201ENST00000610731 82 ntBASIC-0.45□□□□□ -2.48
DDX28Q9NUL7 AL442128.1-201ENST00000615151 90 ntBASIC-0.45□□□□□ -2.48
DDX28Q9NUL7 U6.100-201ENST00000636230 99 ntBASIC-0.45□□□□□ -2.48
DDX28Q9NUL7 RNU6-957P-201ENST00000363652 99 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 AL627230.5-201ENST00000619807 58 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 MTND5P18-201ENST00000445624 1801 ntBASIC-0.46□□□□□ -2.48
DDX28Q9NUL7 RNU6-235P-201ENST00000362644 107 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.150-201ENST00000363562 102 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 SNORD58C-201ENST00000365223 64 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 MIR196A2-201ENST00000385189 110 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNU6-816P-201ENST00000390914 107 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 SNORD126-201ENST00000459475 77 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNA5SP67-201ENST00000516422 131 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 RNU6-175P-201ENST00000516896 107 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 MTND5P41-201ENST00000517498 206 ntBASIC-0.47□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.48□□□□□ -2.49
DDX28Q9NUL7 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.48□□□□□ -2.49
DDX28Q9NUL7 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.48□□□□□ -2.49
DDX28Q9NUL7 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 MIR539-201ENST00000365690 78 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 RNU6-154P-201ENST00000384306 106 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 RNU6-480P-201ENST00000384332 107 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 MIR216B-201ENST00000390186 82 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 RNU6-466P-201ENST00000391224 103 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 RNA5SP272-201ENST00000516095 111 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 RNU6-426P-201ENST00000516464 97 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 AC096720.1-201ENST00000604441 183 ntBASIC-0.49□□□□□ -2.49
DDX28Q9NUL7 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.5□□□□□ -2.49
DDX28Q9NUL7 AC007012.1-201ENST00000567192 175 ntBASIC-0.5□□□□□ -2.49
DDX28Q9NUL7 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.51□□□□□ -2.49
DDX28Q9NUL7 SNORD101-201ENST00000384027 73 ntBASIC-0.51□□□□□ -2.49
DDX28Q9NUL7 AC114755.3-201ENST00000481111 251 ntBASIC-0.51□□□□□ -2.49
DDX28Q9NUL7 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.51□□□□□ -2.49
DDX28Q9NUL7 RNU6-664P-201ENST00000362381 107 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 snosnR66.1-201ENST00000391095 99 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 RNU6-284P-201ENST00000411105 106 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 MTND4LP9-201ENST00000427694 174 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 snoU13.11-201ENST00000459219 104 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 MIR4696-201ENST00000581431 70 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 MIR4432-201ENST00000581823 84 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 MIR548AZ-201ENST00000616567 95 ntBASIC-0.52□□□□□ -2.49
DDX28Q9NUL7 MIR20A-201ENST00000362279 71 ntBASIC-0.53□□□□□ -2.49
DDX28Q9NUL7 RNU6-455P-201ENST00000384681 107 ntBASIC-0.53□□□□□ -2.49
DDX28Q9NUL7 SNORA32.3-201ENST00000384772 121 ntBASIC-0.53□□□□□ -2.49
DDX28Q9NUL7 RNA5SP169-201ENST00000517268 117 ntBASIC-0.53□□□□□ -2.49
DDX28Q9NUL7 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.54□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.54□□□□□ -2.5
DDX28Q9NUL7 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.54□□□□□ -2.5
DDX28Q9NUL7 SNORA40-201ENST00000388090 126 ntBASIC-0.54□□□□□ -2.5
DDX28Q9NUL7 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.54□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.464-201ENST00000384282 110 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 MIR9-2-201ENST00000384838 87 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 AL078595.1-201ENST00000404458 226 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 RNU7-200P-201ENST00000516105 62 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 MIR4679-2-201ENST00000578358 77 ntBASIC-0.55□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.56□□□□□ -2.5
DDX28Q9NUL7 MIR548O2-201ENST00000616090 70 ntBASIC-0.56□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 MIR577-201ENST00000385196 96 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 RNU6-935P-201ENST00000410371 100 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 AL445193.1-201ENST00000441183 141 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 AC244090.1-201ENST00000441884 93 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.57□□□□□ -2.5
DDX28Q9NUL7 RNU6-772P-201ENST00000516042 105 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 188.1 ms