Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU4-63P-201ENST00000411313 118 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 MTATP6P23-201ENST00000440153 476 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 RNU6-758P-201ENST00000516292 89 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 AC130289.1-201ENST00000577321 73 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 MIR3121-201ENST00000579680 77 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 MIR4636-201ENST00000582271 80 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 AC108676.2-201ENST00000605225 163 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 AL442128.1-201ENST00000615151 90 ntBASIC-1.06□□□□□ -2.58
VCX3AQ9NNX9 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.07□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.07□□□□□ -2.58
VCX3AQ9NNX9 RNA5SP136-201ENST00000410906 107 ntBASIC-1.07□□□□□ -2.58
VCX3AQ9NNX9 AC044792.1-201ENST00000593294 196 ntBASIC-1.07□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.478-201ENST00000384358 107 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 RNU6-337P-201ENST00000391243 106 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 RN7SKP19-201ENST00000516016 252 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 AL117187.1-201ENST00000555482 181 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 uc_338.19-201ENST00000616808 99 ntBASIC-1.08□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.47-201ENST00000362697 108 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 RNU6-647P-201ENST00000364243 107 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 RNU6-431P-201ENST00000383874 107 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 MIR147A-201ENST00000385079 72 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 SNORD64-201ENST00000386683 67 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 Z95118.1-201ENST00000421372 247 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 FGF7P7-201ENST00000514120 227 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 AC022559.1-201ENST00000520905 205 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 AC140658.3-201ENST00000567603 271 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.09□□□□□ -2.58
VCX3AQ9NNX9 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.200-201ENST00000364018 102 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU6-915P-201ENST00000364943 103 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU4-11P-201ENST00000365287 132 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.350-201ENST00000365409 98 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.422-201ENST00000384054 114 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU6-460P-201ENST00000391158 108 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 MIR1263-201ENST00000408324 86 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU7-197P-201ENST00000458836 62 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 SNORD18.2-201ENST00000459604 70 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU6-65P-201ENST00000516332 98 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 RNU6-719P-201ENST00000516671 104 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 MIR4499-201ENST00000584834 69 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 AC025521.1-201ENST00000621624 286 ntBASIC-1.1□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.60-201ENST00000362831 98 ntBASIC-1.11□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.11□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.149-201ENST00000363558 117 ntBASIC-1.11□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.668-201ENST00000516233 93 ntBASIC-1.11□□□□□ -2.59
VCX3AQ9NNX9 MIR3128-201ENST00000581957 66 ntBASIC-1.11□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.12□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1227P-201ENST00000383981 107 ntBASIC-1.12□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1160P-201ENST00000384546 104 ntBASIC-1.12□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.12□□□□□ -2.59
VCX3AQ9NNX9 RNU6-111P-201ENST00000517179 105 ntBASIC-1.12□□□□□ -2.59
VCX3AQ9NNX9 SNORD95.1-201ENST00000364099 68 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNA5SP368-201ENST00000364298 116 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 SNORD50.2-201ENST00000365465 70 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNU6-816P-201ENST00000390914 107 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1268P-201ENST00000391214 107 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1239P-201ENST00000391310 107 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNU6-274P-201ENST00000459566 107 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 MIR3681-201ENST00000580089 72 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 MIR4536-1-201ENST00000583537 88 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 MIR382-201ENST00000637119 76 ntBASIC-1.13□□□□□ -2.59
VCX3AQ9NNX9 RNU6-495P-201ENST00000362995 107 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 SNORA62.4-201ENST00000365504 151 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 MIR124-2-201ENST00000385081 109 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 SCARNA18B-201ENST00000458806 135 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 RNU7-85P-201ENST00000458851 63 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 AC021146.9-201ENST00000512503 156 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1023P-201ENST00000516137 106 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 AP001328.1-201ENST00000528550 176 ntBASIC-1.14□□□□□ -2.59
VCX3AQ9NNX9 SNORA63.2-201ENST00000362603 126 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 Y_RNA.163-201ENST00000363702 113 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 RNU6-990P-201ENST00000364385 104 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 AC072026.1-201ENST00000605023 201 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 AC141273.2-201ENST00000618989 130 ntBASIC-1.15□□□□□ -2.59
VCX3AQ9NNX9 SNORD114-17-201ENST00000364699 75 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 RNU6-132P-201ENST00000383863 107 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 RNU6-781P-201ENST00000516377 101 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 YWHAEP3-201ENST00000582767 121 ntBASIC-1.16□□□□□ -2.6
VCX3AQ9NNX9 RNY4P6-201ENST00000363667 96 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 RNU6-138P-201ENST00000515952 107 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 SCARNA17-201ENST00000516183 144 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 MIR3140-201ENST00000583685 90 ntBASIC-1.17□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.11-201ENST00000362375 109 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 Y_RNA.145-201ENST00000363527 102 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 SNORA20.1-201ENST00000364790 130 ntBASIC-1.18□□□□□ -2.6
VCX3AQ9NNX9 SNORA24B-201ENST00000384176 131 ntBASIC-1.18□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 229.6 ms