Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 Y_RNA.648-201ENST00000459455 110 ntBASIC0.47□□□□□ -2.33
CCDC144BQ3MJ40 RNU6-756P-201ENST00000383997 107 ntBASIC0.46□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-644P-201ENST00000391155 98 ntBASIC0.46□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.596-201ENST00000410462 109 ntBASIC0.46□□□□□ -2.34
CCDC144BQ3MJ40 MIR103A1-201ENST00000362165 78 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 SNORA2A-201ENST00000383885 135 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-972P-201ENST00000391208 107 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.705-201ENST00000516862 110 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 MIR5706-201ENST00000579841 80 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 MIR4777-201ENST00000583710 86 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 uc_338.28-201ENST00000612082 187 ntBASIC0.45□□□□□ -2.34
CCDC144BQ3MJ40 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-766P-201ENST00000362478 107 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNA5SP257-201ENST00000363023 116 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNA5SP62-201ENST00000363457 110 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.423-201ENST00000384057 113 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNY4P18-201ENST00000391107 89 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 AL031737.1-201ENST00000450125 223 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-795P-201ENST00000516323 103 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 RNA5SP134-201ENST00000516492 96 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 U7.6-201ENST00000610841 64 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 AC025521.1-201ENST00000621624 286 ntBASIC0.44□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.68-201ENST00000362881 102 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-957P-201ENST00000363652 99 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-269P-201ENST00000391077 97 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 SNORA19.1-201ENST00000410656 129 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-919P-201ENST00000516731 104 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 AL513043.2-201ENST00000573941 143 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 AC103810.7-201ENST00000607821 91 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 AC012531.4-201ENST00000616509 177 ntBASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.43□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.467-201ENST00000384297 102 ntBASIC0.42□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.544-201ENST00000384650 113 ntBASIC0.42□□□□□ -2.34
CCDC144BQ3MJ40 MIR590-201ENST00000385008 97 ntBASIC0.42□□□□□ -2.34
CCDC144BQ3MJ40 MIR617-201ENST00000385030 97 ntBASIC0.42□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.93-201ENST00000363066 109 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.283-201ENST00000364798 112 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 RNU6-215P-201ENST00000365169 102 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 AC073261.1-201ENST00000429409 121 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 Y_RNA.681-201ENST00000516445 113 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 MIR4514-201ENST00000581410 57 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 MIR2909-201ENST00000617113 69 ntBASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.41□□□□□ -2.34
CCDC144BQ3MJ40 SNORA9.1-201ENST00000362412 131 ntBASIC0.4□□□□□ -2.35
CCDC144BQ3MJ40 Y_RNA.107-201ENST00000363190 121 ntBASIC0.4□□□□□ -2.35
CCDC144BQ3MJ40 snoU13.11-201ENST00000459219 104 ntBASIC0.4□□□□□ -2.35
CCDC144BQ3MJ40 AC108740.1-201ENST00000498629 225 ntBASIC0.4□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-537P-201ENST00000517277 103 ntBASIC0.4□□□□□ -2.35
CCDC144BQ3MJ40 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-755P-201ENST00000364400 103 ntBASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-887P-201ENST00000410660 100 ntBASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-65P-201ENST00000516332 98 ntBASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 MTRNR2L2-201ENST00000604882 87 ntBASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 MIR6755-201ENST00000619993 66 ntBASIC0.39□□□□□ -2.35
CCDC144BQ3MJ40 Y_RNA.178-201ENST00000363832 102 ntBASIC0.38□□□□□ -2.35
CCDC144BQ3MJ40 SNORD20-201ENST00000384550 80 ntBASIC0.38□□□□□ -2.35
CCDC144BQ3MJ40 AL161932.1-201ENST00000437408 146 ntBASIC0.38□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-287P-201ENST00000516230 98 ntBASIC0.38□□□□□ -2.35
CCDC144BQ3MJ40 MIR4536-1-201ENST00000583537 88 ntBASIC0.38□□□□□ -2.35
CCDC144BQ3MJ40 SNORD101-201ENST00000384027 73 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR216B-201ENST00000390186 82 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR760-201ENST00000390220 80 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR2113-201ENST00000459007 91 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-1057P-201ENST00000517162 102 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 AC069113.3-201ENST00000521019 150 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR4752-201ENST00000579672 72 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 U6.100-201ENST00000636230 99 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR4315-1-201ENST00000636800 73 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR4315-2-201ENST00000640925 73 ntBASIC0.37□□□□□ -2.35
CCDC144BQ3MJ40 MIR548Z-201ENST00000584743 97 ntBASIC0.36□□□□□ -2.35
CCDC144BQ3MJ40 MIR2052-201ENST00000636055 55 ntBASIC0.36□□□□□ -2.35
CCDC144BQ3MJ40 RNU6-664P-201ENST00000362381 107 ntBASIC0.35□□□□□ -2.35
CCDC144BQ3MJ40 RNA5SP128-201ENST00000365305 116 ntBASIC0.35□□□□□ -2.35
CCDC144BQ3MJ40 AC006210.1-201ENST00000424882 111 ntBASIC0.35□□□□□ -2.35
CCDC144BQ3MJ40 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.35□□□□□ -2.35
CCDC144BQ3MJ40 AC023932.2-201ENST00000603176 175 ntBASIC0.35□□□□□ -2.35
CCDC144BQ3MJ40 Y_RNA.207-201ENST00000364142 106 ntBASIC0.34□□□□□ -2.36
CCDC144BQ3MJ40 RNU6-815P-201ENST00000384080 113 ntBASIC0.34□□□□□ -2.36
CCDC144BQ3MJ40 MIR519E-201ENST00000385075 84 ntBASIC0.34□□□□□ -2.36
CCDC144BQ3MJ40 SNORD110-201ENST00000408189 75 ntBASIC0.34□□□□□ -2.36
CCDC144BQ3MJ40 RNU6-158P-201ENST00000517104 100 ntBASIC0.34□□□□□ -2.36
CCDC144BQ3MJ40 RNU1-141P-201ENST00000364623 158 ntBASIC0.33□□□□□ -2.36
CCDC144BQ3MJ40 SNORD58A-201ENST00000383875 65 ntBASIC0.33□□□□□ -2.36
CCDC144BQ3MJ40 RNA5SP63-201ENST00000391225 112 ntBASIC0.33□□□□□ -2.36
CCDC144BQ3MJ40 MIR548AG2-201ENST00000581228 64 ntBASIC0.33□□□□□ -2.36
CCDC144BQ3MJ40 RNU1-29P-201ENST00000606574 126 ntBASIC0.33□□□□□ -2.36
CCDC144BQ3MJ40 SNORD116-10-201ENST00000363791 102 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 Y_RNA.239-201ENST00000364444 113 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 Y_RNA.433-201ENST00000384089 102 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 AL035461.1-201ENST00000421490 332 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 NAMPTP3-201ENST00000569273 224 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 MIR4696-201ENST00000581431 70 ntBASIC0.32□□□□□ -2.36
CCDC144BQ3MJ40 RNA5SP484-201ENST00000458857 111 ntBASIC0.31□□□□□ -2.36
CCDC144BQ3MJ40 RNU6-109P-201ENST00000516364 107 ntBASIC0.31□□□□□ -2.36
CCDC144BQ3MJ40 RNU6-184P-201ENST00000516514 107 ntBASIC0.31□□□□□ -2.36
CCDC144BQ3MJ40 SNORA70.25-201ENST00000612741 95 ntBASIC0.31□□□□□ -2.36
CCDC144BQ3MJ40 RNU6-519P-201ENST00000410590 108 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms