Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR330-201ENST00000362196 94 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 Y_RNA.107-201ENST00000363190 121 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 RNU6-972P-201ENST00000391208 107 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 RNU6-109P-201ENST00000516364 107 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 RNU6-184P-201ENST00000516514 107 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 AC103810.7-201ENST00000607821 91 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 AL109933.3-201ENST00000619095 188 ntBASIC0.54□□□□□ -2.32
SF3A1Q15459 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.32
SF3A1Q15459 Y_RNA.423-201ENST00000384057 113 ntBASIC0.53□□□□□ -2.32
SF3A1Q15459 RNU6-644P-201ENST00000391155 98 ntBASIC0.53□□□□□ -2.32
SF3A1Q15459 AC025521.1-201ENST00000621624 286 ntBASIC0.53□□□□□ -2.32
SF3A1Q15459 RNU6-466P-201ENST00000391224 103 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 AC114737.2-201ENST00000421583 173 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 RNU6-863P-201ENST00000515989 104 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 RNU6-1265P-201ENST00000516342 103 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 AL513043.2-201ENST00000573941 143 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 MIR4752-201ENST00000579672 72 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 TRDV1-202ENST00000621643 102 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 MIR2052-201ENST00000636055 55 ntBASIC0.52□□□□□ -2.33
SF3A1Q15459 RNU6-147P-201ENST00000383983 107 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 SNORD41.1-201ENST00000391000 69 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 RNU6-887P-201ENST00000410660 100 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 AL161932.1-201ENST00000437408 146 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 Y_RNA.648-201ENST00000459455 110 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 RNU6-158P-201ENST00000517104 100 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 AC243829.6-201ENST00000612652 106 ntBASIC0.51□□□□□ -2.33
SF3A1Q15459 SNORD115-44-201ENST00000365391 82 ntBASIC0.5□□□□□ -2.33
SF3A1Q15459 MIR1197-201ENST00000408818 88 ntBASIC0.5□□□□□ -2.33
SF3A1Q15459 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.5□□□□□ -2.33
SF3A1Q15459 AC090625.1-201ENST00000357130 210 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNA5SP62-201ENST00000363457 110 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU6-957P-201ENST00000363652 99 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 SNORD58A-201ENST00000383875 65 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU6-32P-201ENST00000383948 107 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 SNORA50A-201ENST00000384225 134 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU6-13P-201ENST00000384248 107 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU6-12P-201ENST00000384604 107 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU6-41P-201ENST00000384741 107 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 AC073261.1-201ENST00000429409 121 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 MTATP8P2-201ENST00000435212 202 ntBASIC0.49□□□□□ -2.33
SF3A1Q15459 RNU7-74P-201ENST00000459104 62 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 snoU13.11-201ENST00000459219 104 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 RNU7-61P-201ENST00000515897 61 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 RNU7-129P-201ENST00000516128 62 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 MIR3920-201ENST00000581751 86 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 AP001318.4-201ENST00000616637 121 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 AL162376.1-201ENST00000624117 175 ntBASIC0.48□□□□□ -2.33
SF3A1Q15459 Y_RNA.81-201ENST00000362997 102 ntBASIC0.47□□□□□ -2.33
SF3A1Q15459 Y_RNA.283-201ENST00000364798 112 ntBASIC0.47□□□□□ -2.33
SF3A1Q15459 RNU6-269P-201ENST00000391077 97 ntBASIC0.47□□□□□ -2.33
SF3A1Q15459 Y_RNA.596-201ENST00000410462 109 ntBASIC0.47□□□□□ -2.33
SF3A1Q15459 SNORA40.13-201ENST00000516379 120 ntBASIC0.47□□□□□ -2.33
SF3A1Q15459 RNA5SP257-201ENST00000363023 116 ntBASIC0.46□□□□□ -2.34
SF3A1Q15459 RNU6-1327P-201ENST00000365302 105 ntBASIC0.46□□□□□ -2.34
SF3A1Q15459 VTRNA1-3-201ENST00000365645 89 ntBASIC0.46□□□□□ -2.34
SF3A1Q15459 Y_RNA.495-201ENST00000384435 112 ntBASIC0.46□□□□□ -2.34
SF3A1Q15459 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.46□□□□□ -2.34
SF3A1Q15459 SNORD116-10-201ENST00000363791 102 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 RNU6-65P-201ENST00000516332 98 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 Y_RNA.681-201ENST00000516445 113 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 MIR4536-1-201ENST00000583537 88 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 MIR6755-201ENST00000619993 66 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 AC073869.9-201ENST00000641610 120 ntBASIC0.45□□□□□ -2.34
SF3A1Q15459 RNU6-509P-201ENST00000363519 107 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 SNORA2A-201ENST00000383885 135 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 MIR760-201ENST00000390220 80 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 RNA5SP134-201ENST00000516492 96 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 MTRNR2L2-201ENST00000604882 87 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 U6.100-201ENST00000636230 99 ntBASIC0.44□□□□□ -2.34
SF3A1Q15459 Y_RNA.68-201ENST00000362881 102 ntBASIC0.43□□□□□ -2.34
SF3A1Q15459 RNU6-153P-201ENST00000364422 104 ntBASIC0.43□□□□□ -2.34
SF3A1Q15459 RNU6-287P-201ENST00000516230 98 ntBASIC0.43□□□□□ -2.34
SF3A1Q15459 U7.3-201ENST00000616123 62 ntBASIC0.43□□□□□ -2.34
SF3A1Q15459 SNORD101-201ENST00000384027 73 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 MIR617-201ENST00000385030 97 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-519P-201ENST00000410590 108 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU7-85P-201ENST00000458851 63 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-848P-201ENST00000515948 107 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-617P-201ENST00000516147 107 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-473P-201ENST00000516164 107 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-1049P-201ENST00000516414 107 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 SNORA62.5-201ENST00000516634 120 ntBASIC0.42□□□□□ -2.34
SF3A1Q15459 RNU6-664P-201ENST00000362381 107 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 SNORA9.1-201ENST00000362412 131 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 Y_RNA.348-201ENST00000365403 103 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 RNU6-815P-201ENST00000384080 113 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 RNU6-75P-201ENST00000515944 104 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 MIR4514-201ENST00000581410 57 ntBASIC0.41□□□□□ -2.34
SF3A1Q15459 Y_RNA.207-201ENST00000364142 106 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 MIR2113-201ENST00000459007 91 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 SNORD4B-201ENST00000459083 72 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 RNU6-162P-201ENST00000516228 103 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 Y_RNA.677-201ENST00000516401 85 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 MIR4696-201ENST00000581431 70 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 SNORA70.25-201ENST00000612741 95 ntBASIC0.4□□□□□ -2.35
SF3A1Q15459 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.39□□□□□ -2.35
SF3A1Q15459 Y_RNA.239-201ENST00000364444 113 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms