Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.78□□□□□ -2.29
FOXN3O00409 RNU6-132P-201ENST00000383863 107 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 MIR519A1-201ENST00000385257 85 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 Y_RNA.611-201ENST00000410682 108 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 AC244505.6-201ENST00000452829 130 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 RNU7-161P-201ENST00000517289 62 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.77□□□□□ -2.29
FOXN3O00409 IGLL4P-201ENST00000614590 133 ntBASIC0.77□□□□□ -2.29
FOXN3O00409 SNORD114-26-201ENST00000363543 72 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 RNU6-497P-201ENST00000365316 104 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 Y_RNA.388-201ENST00000383919 113 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
FOXN3O00409 RNA5SP292-201ENST00000390974 118 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 RNY4P29-201ENST00000410801 97 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 MIR6779-201ENST00000617283 64 ntBASIC0.76□□□□□ -2.29
FOXN3O00409 SNORD18A-201ENST00000363753 72 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 MIR450A2-201ENST00000385022 100 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 MIR140-201ENST00000385282 100 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 SNORA26.2-201ENST00000390922 122 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 AC022137.1-201ENST00000483735 151 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 RN7SKP12-201ENST00000516275 143 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 RNU7-153P-201ENST00000516455 62 ntBASIC0.75□□□□□ -2.29
FOXN3O00409 RNU6-1229P-201ENST00000364295 107 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 RNU6-716P-201ENST00000365621 103 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
FOXN3O00409 RNU6-592P-201ENST00000411333 103 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 RNU6-135P-201ENST00000516769 101 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 MIR6835-201ENST00000621552 64 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 AC244669.1-204ENST00000621564 178 ntBASIC0.74□□□□□ -2.29
FOXN3O00409 RNU6-509P-201ENST00000363519 107 ntBASIC0.73□□□□□ -2.29
FOXN3O00409 RNU6-811P-201ENST00000384069 107 ntBASIC0.73□□□□□ -2.29
FOXN3O00409 RNU6-675P-201ENST00000384236 104 ntBASIC0.73□□□□□ -2.29
FOXN3O00409 RNU6-1265P-201ENST00000516342 103 ntBASIC0.73□□□□□ -2.29
FOXN3O00409 MIR548BB-201ENST00000626714 66 ntBASIC0.73□□□□□ -2.29
FOXN3O00409 Y_RNA.36-201ENST00000362602 112 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 RNU6-633P-201ENST00000362612 103 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 SNORD101-201ENST00000384027 73 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 SNORD28-201ENST00000384706 75 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 MIR548L-201ENST00000408303 86 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.72□□□□□ -2.29
FOXN3O00409 MIR3064-201ENST00000581130 66 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 AC104996.3-201ENST00000590718 94 ntBASIC0.72□□□□□ -2.29
FOXN3O00409 RNA5SP403-201ENST00000363598 108 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 RNA5SP173-201ENST00000364857 136 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 MIR519C-201ENST00000385053 87 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 SNORD90-201ENST00000391145 111 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 RNU7-13P-201ENST00000516413 62 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 MIR4714-201ENST00000580728 77 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 MIR4696-201ENST00000581431 70 ntBASIC0.71□□□□□ -2.3
FOXN3O00409 RNU6-573P-201ENST00000383938 106 ntBASIC0.7□□□□□ -2.3
FOXN3O00409 Y_RNA.596-201ENST00000410462 109 ntBASIC0.7□□□□□ -2.3
FOXN3O00409 SNORA18.5-201ENST00000516616 101 ntBASIC0.7□□□□□ -2.3
FOXN3O00409 MIR4639-201ENST00000584938 69 ntBASIC0.7□□□□□ -2.3
FOXN3O00409 AL590095.2-201ENST00000604136 117 ntBASIC0.7□□□□□ -2.3
FOXN3O00409 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.7□□□□□ -2.3
FOXN3O00409 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
FOXN3O00409 RNU6-664P-201ENST00000362381 107 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 RNA5SP325-201ENST00000363756 130 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 Y_RNA.491-201ENST00000384417 107 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.69□□□□□ -2.3
FOXN3O00409 RNU6-287P-201ENST00000516230 98 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 RNA5SP94-201ENST00000516917 108 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 RNA5SP47-201ENST00000517230 109 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 MIR5588-201ENST00000581890 63 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 AC092634.7-201ENST00000621022 103 ntBASIC0.69□□□□□ -2.3
FOXN3O00409 SNORA36.1-201ENST00000363424 132 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 Y_RNA.239-201ENST00000364444 113 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 MIR548U-201ENST00000390728 81 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 RNU6-1052P-201ENST00000411398 104 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 RNU4-54P-201ENST00000516428 129 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 RNU6-719P-201ENST00000516671 104 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 MIR4796-201ENST00000580742 81 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 MIR548AG2-201ENST00000581228 64 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 AC067863.3-201ENST00000624172 122 ntBASIC0.68□□□□□ -2.3
FOXN3O00409 Y_RNA.205-201ENST00000364128 113 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 Y_RNA.207-201ENST00000364142 106 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 MIR508-201ENST00000384857 115 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 MIR1236-201ENST00000408340 102 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 FGF7P7-201ENST00000514120 227 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 RNA5SP227-201ENST00000516184 113 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 RNA5SP121-201ENST00000516537 101 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 MIR3920-201ENST00000581751 86 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 SNORA25.18-201ENST00000607153 114 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 AC006160.2-201ENST00000637708 154 ntBASIC0.67□□□□□ -2.3
FOXN3O00409 SNORD115-37-201ENST00000363768 82 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 MIR451A-201ENST00000385059 72 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 MIR216A-201ENST00000385063 110 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 MIR2113-201ENST00000459007 91 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 SCARNA16.5-201ENST00000517114 183 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 RN7SL793P-201ENST00000583259 296 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 MIR3140-201ENST00000583685 90 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.66□□□□□ -2.3
FOXN3O00409 RNA5SP517-201ENST00000364724 117 ntBASIC0.65□□□□□ -2.31
FOXN3O00409 RNU6-979P-201ENST00000383896 107 ntBASIC0.65□□□□□ -2.31
FOXN3O00409 RNU6-1126P-201ENST00000384002 107 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 262 ms