Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR4419B-201ENST00000577260 68 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 MIR4804-201ENST00000581683 73 ntBASIC1.84□□□□□ -2.11
USP3Q9Y6I4 MIR1-1-201ENST00000362147 71 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 Y_RNA.36-201ENST00000362602 112 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MIR942-201ENST00000401111 86 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MIR4484-201ENST00000582855 83 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 uc_338.20-201ENST00000621563 178 ntBASIC1.83□□□□□ -2.12
USP3Q9Y6I4 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP3Q9Y6I4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
USP3Q9Y6I4 SNORD90-201ENST00000391145 111 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 Y_RNA.606-201ENST00000410579 103 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-634P-201ENST00000459134 106 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-548P-201ENST00000517083 115 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 RNU6-1015P-201ENST00000517121 99 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 MIR4524B-201ENST00000581569 115 ntBASIC1.82□□□□□ -2.12
USP3Q9Y6I4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNA5SP432-201ENST00000362480 116 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU6-587P-201ENST00000391282 106 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU7-56P-201ENST00000458744 62 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 AC097510.1-201ENST00000510945 133 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.81□□□□□ -2.12
USP3Q9Y6I4 RNU6-340P-201ENST00000364005 107 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 MIR100-201ENST00000385259 80 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 MIR216B-201ENST00000390186 82 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 AC108210.2-201ENST00000503681 201 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 SNORA70.22-201ENST00000517160 124 ntBASIC1.8□□□□□ -2.12
USP3Q9Y6I4 RNU6-369P-201ENST00000362515 102 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 MIR451A-201ENST00000385059 72 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
USP3Q9Y6I4 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 snoU13.17-201ENST00000458802 104 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 RNU6-687P-201ENST00000516443 89 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 MIR8081-201ENST00000611533 95 ntBASIC1.79□□□□□ -2.12
USP3Q9Y6I4 SNORA8.1-201ENST00000384250 140 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 SNORA25.15-201ENST00000516487 89 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 AC012493.3-201ENST00000604494 112 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.78□□□□□ -2.12
USP3Q9Y6I4 RNA5SP245-201ENST00000364239 121 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 SNORA24B-201ENST00000384176 131 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 MIR1827-201ENST00000408549 66 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU6-135P-201ENST00000516769 101 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 U6.81-201ENST00000612550 106 ntBASIC1.77□□□□□ -2.13
USP3Q9Y6I4 RNU1-17P-201ENST00000363022 152 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNA5SP190-201ENST00000365222 118 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNU7-13P-201ENST00000516413 62 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 MIR502-201ENST00000606349 86 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 AL136317.1-201ENST00000612653 226 ntBASIC1.76□□□□□ -2.13
USP3Q9Y6I4 RNU6-154P-201ENST00000384306 106 ntBASIC1.75□□□□□ -2.13
USP3Q9Y6I4 uc_338.16-201ENST00000621804 95 ntBASIC1.75□□□□□ -2.13
USP3Q9Y6I4 Y_RNA.371-201ENST00000365591 113 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR520F-201ENST00000384824 87 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
USP3Q9Y6I4 RNU6-482P-201ENST00000391068 107 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR3140-201ENST00000583685 90 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 MIR4769-201ENST00000584126 77 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 AL353997.5-201ENST00000618886 171 ntBASIC1.74□□□□□ -2.13
USP3Q9Y6I4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
USP3Q9Y6I4 SNORD13-201ENST00000459299 104 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNU6-287P-201ENST00000516230 98 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNU6-752P-201ENST00000516376 102 ntBASIC1.73□□□□□ -2.13
USP3Q9Y6I4 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
USP3Q9Y6I4 RNA5SP403-201ENST00000363598 108 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 RNU6-1241P-201ENST00000384536 107 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 MIR154-201ENST00000385243 84 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 MIR4781-201ENST00000585250 76 ntBASIC1.72□□□□□ -2.13
USP3Q9Y6I4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.13
USP3Q9Y6I4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNA5SP99-201ENST00000364020 114 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RNU6-1177P-201ENST00000391058 104 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 SNORA31.14-201ENST00000516728 116 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 MIR3675-201ENST00000583661 73 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 RMST_2.1-201ENST00000617263 136 ntBASIC1.71□□□□□ -2.14
USP3Q9Y6I4 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 RNU6-649P-201ENST00000384463 107 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 MIR222-201ENST00000384992 110 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 SNORA67.5-201ENST00000391036 107 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 SNORA17.3-201ENST00000391159 129 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 MIR8053-201ENST00000613344 75 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 AL157834.3-201ENST00000615543 103 ntBASIC1.7□□□□□ -2.14
USP3Q9Y6I4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.7□□□□□ -2.14
USP3Q9Y6I4 ZNF209P-201ENST00000593450 2304 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 SNORD115-24-201ENST00000363528 82 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 MIR2113-201ENST00000459007 91 ntBASIC1.69□□□□□ -2.14
USP3Q9Y6I4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 FABP5P4-201ENST00000437203 171 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-274P-201ENST00000459566 107 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.68□□□□□ -2.14
USP3Q9Y6I4 RNU6-824P-201ENST00000363724 104 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 AC002429.1-201ENST00000437672 148 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 RNU7-74P-201ENST00000459104 62 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 AC125388.1-201ENST00000459631 156 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 MIR4285-201ENST00000581001 85 ntBASIC1.67□□□□□ -2.14
USP3Q9Y6I4 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms