Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 TRDV1-202ENST00000621643 102 ntBASIC1.57□□□□□ -2.16
USP40Q9NVE5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
USP40Q9NVE5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.56□□□□□ -2.16
USP40Q9NVE5 RNU6-208P-201ENST00000362431 107 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 Y_RNA.363-201ENST00000365529 113 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 RNU6-42P-201ENST00000384165 107 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 RNU6-411P-201ENST00000384451 107 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
USP40Q9NVE5 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
USP40Q9NVE5 SNORA40.6-201ENST00000391153 128 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 AC092628.1-201ENST00000436250 252 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 RNA5SP61-201ENST00000516453 100 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 RNU6-539P-201ENST00000516665 103 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 RN7SKP88-201ENST00000516847 250 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 MIR3660-201ENST00000584845 100 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 7SK.8-201ENST00000612110 250 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 MIR6082-201ENST00000613604 109 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 7SK.11-201ENST00000615477 250 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 7SK.13-201ENST00000622040 250 ntBASIC1.56□□□□□ -2.16
USP40Q9NVE5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.56□□□□□ -2.16
USP40Q9NVE5 MIR548U-201ENST00000390728 81 ntBASIC1.55□□□□□ -2.16
USP40Q9NVE5 RNU6-1054P-201ENST00000411293 104 ntBASIC1.55□□□□□ -2.16
USP40Q9NVE5 MIR3140-201ENST00000583685 90 ntBASIC1.55□□□□□ -2.16
USP40Q9NVE5 Y_RNA.42-201ENST00000362660 108 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNU6-1260P-201ENST00000362944 107 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNA5SP245-201ENST00000364239 121 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNU6-1051P-201ENST00000365471 102 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 Y_RNA.386-201ENST00000383913 105 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 SNORA75.2-201ENST00000391138 150 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 SNORA75.3-201ENST00000391231 150 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNU6-955P-201ENST00000410497 104 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 Y_RNA.809-201ENST00000516058 95 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNA5SP220-201ENST00000516298 104 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 RNU6-70P-201ENST00000516438 60 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 AC036111.3-201ENST00000526389 112 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 AL078603.1-201ENST00000603824 313 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 MTRNR2L2-201ENST00000604882 87 ntBASIC1.54□□□□□ -2.16
USP40Q9NVE5 Y_RNA.12-201ENST00000362393 112 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 RNU6-590P-201ENST00000365039 107 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 SNORD114-22-201ENST00000365423 72 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 RNU6-634P-201ENST00000459134 106 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 AC048334.1-201ENST00000477975 159 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 Y_RNA.697-201ENST00000516776 113 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 RNU6-303P-201ENST00000517091 106 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 MIR4696-201ENST00000581431 70 ntBASIC1.53□□□□□ -2.16
USP40Q9NVE5 RNU6-369P-201ENST00000362515 102 ntBASIC1.52□□□□□ -2.17
USP40Q9NVE5 MIR1265-201ENST00000408444 86 ntBASIC1.52□□□□□ -2.17
USP40Q9NVE5 RPS29P23-201ENST00000458635 123 ntBASIC1.52□□□□□ -2.17
USP40Q9NVE5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.52□□□□□ -2.17
USP40Q9NVE5 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.52□□□□□ -2.17
USP40Q9NVE5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.52□□□□□ -2.17
USP40Q9NVE5 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.52□□□□□ -2.17
USP40Q9NVE5 MIR101-2-201ENST00000362195 79 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 Y_RNA.56-201ENST00000362798 112 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 Y_RNA.207-201ENST00000364142 106 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 SNORD115-31-201ENST00000365318 82 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 SNORA24B-201ENST00000384176 131 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 RNU6-540P-201ENST00000384622 101 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 MIR1257-201ENST00000408490 117 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 MIR7974-201ENST00000615835 79 ntBASIC1.51□□□□□ -2.17
USP40Q9NVE5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
USP40Q9NVE5 RNU6-664P-201ENST00000362381 107 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
USP40Q9NVE5 RNU6-154P-201ENST00000384306 106 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 RNU6-1265P-201ENST00000516342 103 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 MIR4771-2-201ENST00000577758 74 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 MIR548H5-201ENST00000580314 60 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 MIR4771-1-201ENST00000582617 74 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 MIR6734-201ENST00000621166 68 ntBASIC1.5□□□□□ -2.17
USP40Q9NVE5 MIR96-201ENST00000362288 78 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 Y_RNA.264-201ENST00000364665 102 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 MIR125B2-201ENST00000385128 89 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 MIR758-201ENST00000390227 88 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 RNU6-587P-201ENST00000391282 106 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 RNU6-380P-201ENST00000410207 107 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 AC097635.1-201ENST00000450678 155 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 RNU7-40P-201ENST00000516397 64 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 RNU6-807P-201ENST00000516805 107 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 RNU6-765P-201ENST00000516916 99 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 YWHAEP2-201ENST00000580066 112 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 YWHAEP3-201ENST00000582767 121 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 MIR1297-201ENST00000637311 77 ntBASIC1.49□□□□□ -2.17
USP40Q9NVE5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
USP40Q9NVE5 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP40Q9NVE5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP40Q9NVE5 MIR26B-201ENST00000362251 77 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 RNU5F-1-201ENST00000362507 117 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 Y_RNA.36-201ENST00000362602 112 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 RNU6-934P-201ENST00000365154 107 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 Y_RNA.330-201ENST00000365230 109 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 SNORD101-201ENST00000384027 73 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 RNU6-1241P-201ENST00000384536 107 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 RNU6-291P-201ENST00000384720 107 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 MIR942-201ENST00000401111 86 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 Y_RNA.596-201ENST00000410462 109 ntBASIC1.48□□□□□ -2.17
USP40Q9NVE5 Y_RNA.681-201ENST00000516445 113 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms