Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AP001328.1-201ENST00000528550 176 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 AC084368.1-201ENST00000620935 65 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 MIR6514-201ENST00000622549 70 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 RNU1-141P-201ENST00000364623 158 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 SNORD115-44-201ENST00000365391 82 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 MIR516A2-201ENST00000384888 90 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 MIR516A1-201ENST00000385033 90 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 RNA5SP25-201ENST00000410815 110 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 SNORD4A-201ENST00000459174 72 ntBASIC-0.29□□□□□ -2.46
DDX28Q9NUL7 SNORD114-28-201ENST00000363610 72 ntBASIC-0.3□□□□□ -2.46
DDX28Q9NUL7 MIR876-201ENST00000401147 81 ntBASIC-0.3□□□□□ -2.46
DDX28Q9NUL7 CR383656.4-201ENST00000546909 122 ntBASIC-0.3□□□□□ -2.46
DDX28Q9NUL7 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.3□□□□□ -2.46
DDX28Q9NUL7 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 SNORD114-12-201ENST00000365400 75 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 SNORD116-18-201ENST00000383961 92 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 RNU6-30P-201ENST00000384561 107 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 MIR617-201ENST00000385030 97 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 MIR1263-201ENST00000408324 86 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 MIR548X2-201ENST00000579776 100 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 MIR1255B1-201ENST00000636325 63 ntBASIC-0.31□□□□□ -2.46
DDX28Q9NUL7 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.32□□□□□ -2.46
DDX28Q9NUL7 AC109327.2-201ENST00000448339 378 ntBASIC-0.32□□□□□ -2.46
DDX28Q9NUL7 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.32□□□□□ -2.46
DDX28Q9NUL7 MIR148A-201ENST00000362215 68 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 MIR101-1-201ENST00000362265 75 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 MIR516B1-201ENST00000385211 90 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 RNU6-182P-201ENST00000516970 105 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 AL512310.12-203ENST00000640543 90 ntBASIC-0.33□□□□□ -2.46
DDX28Q9NUL7 MIR548D2-201ENST00000384955 97 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 MIR519E-201ENST00000385075 84 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 SNORA7.5-201ENST00000410672 110 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 AL158147.1-201ENST00000443970 75 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 MIR548AG2-201ENST00000581228 64 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 AC108676.2-201ENST00000605225 163 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 MIR8064-201ENST00000612863 90 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 AC069503.3-201ENST00000618674 145 ntBASIC-0.34□□□□□ -2.46
DDX28Q9NUL7 RNU6-363P-201ENST00000362895 105 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 AC093423.1-201ENST00000440817 142 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 MIR3144-201ENST00000579460 79 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 U7.2-201ENST00000607576 63 ntBASIC-0.35□□□□□ -2.47
DDX28Q9NUL7 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 SNORD114-15-201ENST00000364687 72 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 RNU6-243P-201ENST00000391140 107 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 RNU6-735P-201ENST00000410612 107 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 SPINT5P-201ENST00000448174 155 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 RNU6-90P-201ENST00000606352 106 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 MIR3666-201ENST00000607845 111 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 uc_338.10-201ENST00000621872 182 ntBASIC-0.36□□□□□ -2.47
DDX28Q9NUL7 SNORD36A-201ENST00000362874 73 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 SNORD38.1-201ENST00000363863 68 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 RNU6-804P-201ENST00000384286 107 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 AC244250.2-201ENST00000418731 148 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 RN7SL660P-201ENST00000614852 299 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.37□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 SNORD49B-201ENST00000365172 72 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 MIR548G-201ENST00000408442 89 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 RNA5SP451-201ENST00000410588 110 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 MIR2113-201ENST00000459007 91 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 RNU6-287P-201ENST00000516230 98 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 MIR4473-201ENST00000583731 91 ntBASIC-0.38□□□□□ -2.47
DDX28Q9NUL7 RNY4P6-201ENST00000363667 96 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 RNA5SP300-201ENST00000391197 107 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 RNU6-320P-201ENST00000516511 106 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 MIR4460-201ENST00000577862 86 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 YWHAEP2-201ENST00000580066 112 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 MIR6507-201ENST00000613630 70 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 TRDV1-202ENST00000621643 102 ntBASIC-0.39□□□□□ -2.47
DDX28Q9NUL7 MIR655-201ENST00000362159 97 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 U8.6-201ENST00000364939 135 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 RNU6-409P-201ENST00000384114 104 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 MIR181B2-201ENST00000385004 89 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 MIR569-201ENST00000385228 96 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 RNU6-781P-201ENST00000516377 101 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.4□□□□□ -2.47
DDX28Q9NUL7 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.41□□□□□ -2.48
DDX28Q9NUL7 RNU6-811P-201ENST00000384069 107 ntBASIC-0.41□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 SNORD114-11-201ENST00000363738 75 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 SNORD95.1-201ENST00000364099 68 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 RNA5SP205-201ENST00000364653 136 ntBASIC-0.42□□□□□ -2.48
DDX28Q9NUL7 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 221.9 ms