Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.51□□□□□ -2.33
CHMP4CQ96CF2 MIR924-201ENST00000638017 53 ntBASIC0.51□□□□□ -2.33
CHMP4CQ96CF2 RNU6-1260P-201ENST00000362944 107 ntBASIC0.5□□□□□ -2.33
CHMP4CQ96CF2 RNA5SP403-201ENST00000363598 108 ntBASIC0.5□□□□□ -2.33
CHMP4CQ96CF2 RNU7-106P-201ENST00000459514 67 ntBASIC0.5□□□□□ -2.33
CHMP4CQ96CF2 RNU6-863P-201ENST00000515989 104 ntBASIC0.5□□□□□ -2.33
CHMP4CQ96CF2 RNU6-832P-201ENST00000363319 107 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 RNA5SP457-201ENST00000363657 124 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 RNA5SP325-201ENST00000363756 130 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 RNU6-1254P-201ENST00000391266 104 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 RNU2-59P-201ENST00000410482 191 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 Y_RNA.659-201ENST00000515994 113 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 AC141557.1-201ENST00000540982 400 ntBASIC0.49□□□□□ -2.33
CHMP4CQ96CF2 Y_RNA.173-201ENST00000363776 113 ntBASIC0.48□□□□□ -2.33
CHMP4CQ96CF2 RNU6-1056P-201ENST00000383996 107 ntBASIC0.48□□□□□ -2.33
CHMP4CQ96CF2 RNU6-524P-201ENST00000384270 107 ntBASIC0.48□□□□□ -2.33
CHMP4CQ96CF2 RNU6-243P-201ENST00000391140 107 ntBASIC0.48□□□□□ -2.33
CHMP4CQ96CF2 RNU2-51P-201ENST00000410708 197 ntBASIC0.48□□□□□ -2.33
CHMP4CQ96CF2 AC090625.1-201ENST00000357130 210 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 RNU6-834P-201ENST00000362367 110 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 SNORD44.1-201ENST00000363202 61 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 RNU6-1107P-201ENST00000364817 104 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 Y_RNA.323-201ENST00000365157 109 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 AL606753.1-201ENST00000427435 87 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 AC243829.6-201ENST00000612652 106 ntBASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.47□□□□□ -2.33
CHMP4CQ96CF2 MIR330-201ENST00000362196 94 ntBASIC0.46□□□□□ -2.34
CHMP4CQ96CF2 Y_RNA.10-201ENST00000362371 110 ntBASIC0.46□□□□□ -2.34
CHMP4CQ96CF2 RNU6-726P-201ENST00000364680 107 ntBASIC0.46□□□□□ -2.34
CHMP4CQ96CF2 SNORD113-1-201ENST00000365321 69 ntBASIC0.46□□□□□ -2.34
CHMP4CQ96CF2 VTRNA1-3-201ENST00000365645 89 ntBASIC0.46□□□□□ -2.34
CHMP4CQ96CF2 RNU6-1125P-201ENST00000363601 107 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 Y_RNA.163-201ENST00000363702 113 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 RNU4-36P-201ENST00000364294 144 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 RNU6-1014P-201ENST00000383940 103 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 RNU6-1126P-201ENST00000384002 107 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 RNU6-480P-201ENST00000384332 107 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 AC069271.1-201ENST00000445577 156 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 RNU7-13P-201ENST00000516413 62 ntBASIC0.45□□□□□ -2.34
CHMP4CQ96CF2 MIR103A1-201ENST00000362165 78 ntBASIC0.44□□□□□ -2.34
CHMP4CQ96CF2 SNORD45B-201ENST00000364617 72 ntBASIC0.44□□□□□ -2.34
CHMP4CQ96CF2 MIR6129-201ENST00000616087 109 ntBASIC0.43□□□□□ -2.34
CHMP4CQ96CF2 MIR8087-201ENST00000612745 78 ntBASIC0.42□□□□□ -2.34
CHMP4CQ96CF2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.42□□□□□ -2.34
CHMP4CQ96CF2 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 RNA5SP62-201ENST00000363457 110 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 RNU6-1163P-201ENST00000364516 107 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 Y_RNA.423-201ENST00000384057 113 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 SNORD41.1-201ENST00000391000 69 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 MIR4439-201ENST00000583746 80 ntBASIC0.41□□□□□ -2.34
CHMP4CQ96CF2 SNORD36A-201ENST00000362874 73 ntBASIC0.4□□□□□ -2.35
CHMP4CQ96CF2 AC109327.2-201ENST00000448339 378 ntBASIC0.4□□□□□ -2.35
CHMP4CQ96CF2 RNU6-406P-201ENST00000516470 107 ntBASIC0.4□□□□□ -2.35
CHMP4CQ96CF2 RNU6-1081P-201ENST00000384537 107 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 MIR1302-5-201ENST00000408164 150 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 AC073261.1-201ENST00000429409 121 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 RNU6-1265P-201ENST00000516342 103 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 RNA5SP134-201ENST00000516492 96 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 RNA5SP330-201ENST00000517096 96 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 MIR4514-201ENST00000581410 57 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 AL162376.1-201ENST00000624117 175 ntBASIC0.39□□□□□ -2.35
CHMP4CQ96CF2 SNORA19-201ENST00000384737 128 ntBASIC0.38□□□□□ -2.35
CHMP4CQ96CF2 RNU7-74P-201ENST00000459104 62 ntBASIC0.38□□□□□ -2.35
CHMP4CQ96CF2 RNU6-1244P-201ENST00000363614 108 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.273-201ENST00000364703 102 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 SNORD115-44-201ENST00000365391 82 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 MIR181B2-201ENST00000385004 89 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 RNU6-466P-201ENST00000391224 103 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.601-201ENST00000410500 113 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 MIR4752-201ENST00000579672 72 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 MIR3613-201ENST00000579844 87 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 MIR3920-201ENST00000581751 86 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 RNU6-86P-201ENST00000606534 107 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 TRDV1-202ENST00000621643 102 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 AC073869.9-201ENST00000641610 120 ntBASIC0.37□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.95-201ENST00000363079 95 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.115-201ENST00000363272 98 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.258-201ENST00000364613 105 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 SNORA2A-201ENST00000383885 135 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 RNU6-848P-201ENST00000515948 107 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 RNU6-617P-201ENST00000516147 107 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 RNU6-473P-201ENST00000516164 107 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 RNU6-1049P-201ENST00000516414 107 ntBASIC0.36□□□□□ -2.35
CHMP4CQ96CF2 Y_RNA.78-201ENST00000362970 110 ntBASIC0.35□□□□□ -2.35
CHMP4CQ96CF2 RNU6-509P-201ENST00000363519 107 ntBASIC0.35□□□□□ -2.35
CHMP4CQ96CF2 MIR6755-201ENST00000619993 66 ntBASIC0.35□□□□□ -2.35
CHMP4CQ96CF2 MIR760-201ENST00000390220 80 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 RNU6-269P-201ENST00000391077 97 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 MIR1197-201ENST00000408818 88 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 RNU7-129P-201ENST00000516128 62 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 SNORA62.5-201ENST00000516634 120 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 AL109933.3-201ENST00000619095 188 ntBASIC0.34□□□□□ -2.36
CHMP4CQ96CF2 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.33□□□□□ -2.36
CHMP4CQ96CF2 SNORA9.1-201ENST00000362412 131 ntBASIC0.33□□□□□ -2.36
CHMP4CQ96CF2 RNU6-589P-201ENST00000516485 107 ntBASIC0.33□□□□□ -2.36
CHMP4CQ96CF2 AC023932.2-201ENST00000603176 175 ntBASIC0.33□□□□□ -2.36
CHMP4CQ96CF2 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.32□□□□□ -2.36
CHMP4CQ96CF2 RNU6-957P-201ENST00000363652 99 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms