Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-476P-201ENST00000384726 107 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 SNORD64-201ENST00000386683 67 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 AL442663.2-201ENST00000554385 511 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 MIR4308-201ENST00000580634 81 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-337P-201ENST00000391243 106 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 AL445193.1-201ENST00000441183 141 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 AC138207.3-201ENST00000585289 166 ntBASIC-1.33□□□□□ -2.62
CCDC88AQ3V6T2 SNORD115-25-201ENST00000362619 82 ntBASIC-1.34□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.34□□□□□ -2.62
CCDC88AQ3V6T2 RNU6-957P-201ENST00000363652 99 ntBASIC-1.34□□□□□ -2.62
CCDC88AQ3V6T2 MIR517B-201ENST00000385102 67 ntBASIC-1.34□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.34□□□□□ -2.62
CCDC88AQ3V6T2 U3.27-201ENST00000391237 200 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 RNU7-164P-201ENST00000459221 62 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 MIR3646-201ENST00000578301 84 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 MIR6129-201ENST00000616087 109 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 MIR382-201ENST00000637119 76 ntBASIC-1.35□□□□□ -2.62
CCDC88AQ3V6T2 RNA5SP93-201ENST00000362525 114 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.160-201ENST00000363677 92 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-978P-201ENST00000364371 103 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-643P-201ENST00000384018 107 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 AL121914.1-201ENST00000450188 156 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-90P-201ENST00000606352 106 ntBASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 ULK3-223ENST00000631115 126 ntTSL 5 BASIC-1.35□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-431P-201ENST00000383874 107 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 SCARNA18B-201ENST00000458806 135 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 MIR4770-201ENST00000579149 58 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 RNU2-4P-201ENST00000606190 192 ntBASIC-1.36□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.584-201ENST00000391090 114 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 SNORD19B-201ENST00000459623 84 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 AC140658.3-201ENST00000567603 271 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 MIR6773-201ENST00000612812 74 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 AL137067.1-201ENST00000615933 120 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 SNORD101-201ENST00000384027 73 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 MIR4696-201ENST00000581431 70 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 AC021753.1-201ENST00000635724 168 ntBASIC-1.37□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.276-201ENST00000364732 109 ntBASIC-1.38□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-768P-201ENST00000384683 107 ntBASIC-1.38□□□□□ -2.63
CCDC88AQ3V6T2 SNORA40.15-201ENST00000516884 107 ntBASIC-1.38□□□□□ -2.63
CCDC88AQ3V6T2 AP002392.1-201ENST00000537692 208 ntBASIC-1.38□□□□□ -2.63
CCDC88AQ3V6T2 SNORD115-23-201ENST00000364461 82 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 MTND5P22-201ENST00000458380 195 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 RNU7-24P-201ENST00000458867 62 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-309P-201ENST00000364573 106 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 SNORD18B-201ENST00000365659 72 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 MIR3149-201ENST00000584629 83 ntBASIC-1.39□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 snoU13.13-201ENST00000458842 104 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 AC113195.1-201ENST00000579952 141 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 TRDV1-202ENST00000621643 102 ntBASIC-1.4□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.70-201ENST00000362886 110 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 RNU6-495P-201ENST00000362995 107 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 RNY3P15-201ENST00000516297 97 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 RNY4P20-201ENST00000516678 93 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.41□□□□□ -2.63
CCDC88AQ3V6T2 Y_RNA.83-201ENST00000363005 113 ntBASIC-1.41□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.41□□□□□ -2.64
CCDC88AQ3V6T2 SNORA62.4-201ENST00000365504 151 ntBASIC-1.41□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-75P-201ENST00000515944 104 ntBASIC-1.41□□□□□ -2.64
CCDC88AQ3V6T2 MIR1302-1-201ENST00000637932 143 ntBASIC-1.41□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.42□□□□□ -2.64
CCDC88AQ3V6T2 MIR6844-201ENST00000637122 62 ntBASIC-1.43□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.43□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.43□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-521P-201ENST00000516663 105 ntBASIC-1.43□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.403-201ENST00000383977 101 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.505-201ENST00000384489 102 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-540P-201ENST00000384622 101 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-876P-201ENST00000391295 104 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 MIR4643-201ENST00000577473 78 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 MIR5704-201ENST00000584029 77 ntBASIC-1.44□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.45□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.579-201ENST00000390939 94 ntBASIC-1.45□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.45□□□□□ -2.64
CCDC88AQ3V6T2 MIR3121-201ENST00000579680 77 ntBASIC-1.45□□□□□ -2.64
CCDC88AQ3V6T2 AL442128.1-201ENST00000615151 90 ntBASIC-1.45□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.54-201ENST00000362766 105 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 MIR548P-201ENST00000408336 84 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-592P-201ENST00000411333 103 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 MTND3P22-201ENST00000510932 243 ntBASIC-1.46□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 314.4 ms