Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.78-201ENST00000362970 110 ntBASIC0.7□□□□□ -2.3
SF3A1Q15459 Y_RNA.163-201ENST00000363702 113 ntBASIC0.7□□□□□ -2.3
SF3A1Q15459 RNU6-215P-201ENST00000365169 102 ntBASIC0.7□□□□□ -2.3
SF3A1Q15459 Y_RNA.374-201ENST00000365606 101 ntBASIC0.7□□□□□ -2.3
SF3A1Q15459 SNORD20-201ENST00000384550 80 ntBASIC0.7□□□□□ -2.3
SF3A1Q15459 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.7□□□□□ -2.3
SF3A1Q15459 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
SF3A1Q15459 Y_RNA.173-201ENST00000363776 113 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 RNU6-716P-201ENST00000365621 103 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 MIR516A2-201ENST00000384888 90 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 MIR516A1-201ENST00000385033 90 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 RNY4P18-201ENST00000391107 89 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 Y_RNA.601-201ENST00000410500 113 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 RNU6-919P-201ENST00000516731 104 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 AC010487.4-201ENST00000637027 61 ntBASIC0.69□□□□□ -2.3
SF3A1Q15459 RNA5SP347-201ENST00000362445 119 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 SNORD45B-201ENST00000364617 72 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 RNU6-1113P-201ENST00000384348 107 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 RNU6-106P-201ENST00000384405 107 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 SNORA68.3-201ENST00000515906 83 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 MIR3613-201ENST00000579844 87 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 MIR7107-201ENST00000611489 80 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 uc_338.17-201ENST00000619633 179 ntBASIC0.68□□□□□ -2.3
SF3A1Q15459 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.68□□□□□ -2.3
SF3A1Q15459 SNORD118-201ENST00000363593 134 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 MIR519A1-201ENST00000385257 85 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 RNU7-106P-201ENST00000459514 67 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 RNU7-161P-201ENST00000517289 62 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 MIR4439-201ENST00000583746 80 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 MIR6828-201ENST00000636181 60 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.67□□□□□ -2.3
SF3A1Q15459 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.67□□□□□ -2.3
SF3A1Q15459 RNU6-1163P-201ENST00000364516 107 ntBASIC0.66□□□□□ -2.3
SF3A1Q15459 RNU6-554P-201ENST00000410466 106 ntBASIC0.66□□□□□ -2.3
SF3A1Q15459 Y_RNA.30-201ENST00000362572 97 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-1125P-201ENST00000363601 107 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-524P-201ENST00000384270 107 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-480P-201ENST00000384332 107 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-1254P-201ENST00000391266 104 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-904P-201ENST00000516206 101 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 MIR924-201ENST00000638017 53 ntBASIC0.65□□□□□ -2.31
SF3A1Q15459 RNU6-1260P-201ENST00000362944 107 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 SNORA51.5-201ENST00000384126 131 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 RNU6-243P-201ENST00000391140 107 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 AL035461.1-201ENST00000421490 332 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 AC109327.2-201ENST00000448339 378 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 SCARNA23-201ENST00000516060 130 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 MIR4711-201ENST00000578274 70 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 uc_338.28-201ENST00000612082 187 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 AC067863.3-201ENST00000624172 122 ntBASIC0.64□□□□□ -2.31
SF3A1Q15459 Y_RNA.95-201ENST00000363079 95 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNA5SP457-201ENST00000363657 124 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNU6-755P-201ENST00000364400 103 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNU6-756P-201ENST00000383997 107 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNA5SP193-201ENST00000410353 107 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNU6-86P-201ENST00000606534 107 ntBASIC0.63□□□□□ -2.31
SF3A1Q15459 RNA5SP403-201ENST00000363598 108 ntBASIC0.62□□□□□ -2.31
SF3A1Q15459 SNORA19.1-201ENST00000410656 129 ntBASIC0.62□□□□□ -2.31
SF3A1Q15459 AL031737.1-201ENST00000450125 223 ntBASIC0.62□□□□□ -2.31
SF3A1Q15459 AC243829.3-201ENST00000622177 108 ntBASIC0.62□□□□□ -2.31
SF3A1Q15459 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
SF3A1Q15459 MIRLET7D-201ENST00000362263 87 ntBASIC0.61□□□□□ -2.31
SF3A1Q15459 Y_RNA.115-201ENST00000363272 98 ntBASIC0.61□□□□□ -2.31
SF3A1Q15459 RNA5SP499-201ENST00000363982 119 ntBASIC0.61□□□□□ -2.31
SF3A1Q15459 AL157398.1-201ENST00000452981 186 ntBASIC0.61□□□□□ -2.31
SF3A1Q15459 RNU6-766P-201ENST00000362478 107 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 SNORD36A-201ENST00000362874 73 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 RNU6-1244P-201ENST00000363614 108 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 RNU6-813P-201ENST00000384691 107 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 MIR590-201ENST00000385008 97 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 Y_RNA.818-201ENST00000618813 71 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 MIR5087-201ENST00000635826 76 ntBASIC0.6□□□□□ -2.31
SF3A1Q15459 RNU6-44P-201ENST00000384045 107 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 MIR181B2-201ENST00000385004 89 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 AC069271.1-201ENST00000445577 156 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 RNU7-13P-201ENST00000516413 62 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 RNA5SP330-201ENST00000517096 96 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 RNU6-537P-201ENST00000517277 103 ntBASIC0.59□□□□□ -2.31
SF3A1Q15459 Y_RNA.96-201ENST00000363092 109 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 RNU6-726P-201ENST00000364680 107 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 RNU6-795P-201ENST00000516323 103 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 RNU6-229P-201ENST00000516614 102 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 MIR4777-201ENST00000583710 86 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 AC012531.4-201ENST00000616509 177 ntBASIC0.58□□□□□ -2.32
SF3A1Q15459 Y_RNA.544-201ENST00000384650 113 ntBASIC0.57□□□□□ -2.32
SF3A1Q15459 RNU2-59P-201ENST00000410482 191 ntBASIC0.57□□□□□ -2.32
SF3A1Q15459 MIR8087-201ENST00000612745 78 ntBASIC0.57□□□□□ -2.32
SF3A1Q15459 SNORA63.4-201ENST00000362763 126 ntBASIC0.56□□□□□ -2.32
SF3A1Q15459 Y_RNA.93-201ENST00000363066 109 ntBASIC0.56□□□□□ -2.32
SF3A1Q15459 Y_RNA.258-201ENST00000364613 105 ntBASIC0.56□□□□□ -2.32
SF3A1Q15459 Y_RNA.467-201ENST00000384297 102 ntBASIC0.56□□□□□ -2.32
SF3A1Q15459 MIR103A1-201ENST00000362165 78 ntBASIC0.55□□□□□ -2.32
SF3A1Q15459 MIR450A1-201ENST00000362262 91 ntBASIC0.55□□□□□ -2.32
SF3A1Q15459 SNORD44.1-201ENST00000363202 61 ntBASIC0.55□□□□□ -2.32
SF3A1Q15459 RNU6-1126P-201ENST00000384002 107 ntBASIC0.55□□□□□ -2.32
SF3A1Q15459 Y_RNA.705-201ENST00000516862 110 ntBASIC0.55□□□□□ -2.32
SF3A1Q15459 MIR548Z-201ENST00000584743 97 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 215.1 ms