Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MIR516A2-201ENST00000384888 90 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 MIR516A1-201ENST00000385033 90 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-1254P-201ENST00000391266 104 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 AC069271.1-201ENST00000445577 156 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-848P-201ENST00000515948 107 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-617P-201ENST00000516147 107 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-473P-201ENST00000516164 107 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-1049P-201ENST00000516414 107 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-412P-201ENST00000516434 106 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 MIR5009-201ENST00000578736 100 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 AL365222.1-201ENST00000614661 98 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 MIR103A1-201ENST00000362165 78 ntBASIC0.32□□□□□ -2.36
SHMT1P34896 Y_RNA.57-201ENST00000362806 113 ntBASIC0.32□□□□□ -2.36
SHMT1P34896 Y_RNA.281-201ENST00000364774 94 ntBASIC0.32□□□□□ -2.36
SHMT1P34896 SNORD116-21-201ENST00000384507 92 ntBASIC0.32□□□□□ -2.36
SHMT1P34896 MIR577-201ENST00000385196 96 ntBASIC0.32□□□□□ -2.36
SHMT1P34896 RNY3P2-201ENST00000362918 102 ntBASIC0.31□□□□□ -2.36
SHMT1P34896 RNU6-524P-201ENST00000384270 107 ntBASIC0.31□□□□□ -2.36
SHMT1P34896 SNORD41.1-201ENST00000391000 69 ntBASIC0.31□□□□□ -2.36
SHMT1P34896 RNA5SP134-201ENST00000516492 96 ntBASIC0.31□□□□□ -2.36
SHMT1P34896 MIR4514-201ENST00000581410 57 ntBASIC0.31□□□□□ -2.36
SHMT1P34896 RNU6-832P-201ENST00000363319 107 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 RNU6-22P-201ENST00000384355 107 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 RNU6-243P-201ENST00000391140 107 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 MIR1197-201ENST00000408818 88 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 AL109933.3-201ENST00000619095 188 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.3□□□□□ -2.36
SHMT1P34896 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.3□□□□□ -2.36
SHMT1P34896 RNA5SP62-201ENST00000363457 110 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 RNU6-1125P-201ENST00000363601 107 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 RNA5SP205-201ENST00000364653 136 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 Y_RNA.323-201ENST00000365157 109 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 RNU6-480P-201ENST00000384332 107 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 RNU6-1168P-201ENST00000390831 104 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.29□□□□□ -2.36
SHMT1P34896 AC141557.1-201ENST00000540982 400 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 MIR2909-201ENST00000617113 69 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 AL162376.1-201ENST00000624117 175 ntBASIC0.29□□□□□ -2.36
SHMT1P34896 RNU6-1144P-201ENST00000384247 104 ntBASIC0.28□□□□□ -2.36
SHMT1P34896 AC108740.1-201ENST00000498629 225 ntBASIC0.28□□□□□ -2.36
SHMT1P34896 RNU6-479P-201ENST00000516348 105 ntBASIC0.28□□□□□ -2.36
SHMT1P34896 RNU7-13P-201ENST00000516413 62 ntBASIC0.28□□□□□ -2.36
SHMT1P34896 MIR6718-201ENST00000616153 80 ntBASIC0.28□□□□□ -2.36
SHMT1P34896 RNU6-834P-201ENST00000362367 110 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 Y_RNA.10-201ENST00000362371 110 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 SNORD36A-201ENST00000362874 73 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 Y_RNA.423-201ENST00000384057 113 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 RNU6-1064P-201ENST00000410626 104 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 AC073261.1-201ENST00000429409 121 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 AC023932.2-201ENST00000603176 175 ntBASIC0.27□□□□□ -2.37
SHMT1P34896 Y_RNA.163-201ENST00000363702 113 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-1163P-201ENST00000364516 107 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 SNORA2A-201ENST00000383885 135 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-476P-201ENST00000384726 107 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-1154P-201ENST00000391001 104 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU7-74P-201ENST00000459104 62 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 Y_RNA.659-201ENST00000515994 113 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-313P-201ENST00000516317 112 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-1265P-201ENST00000516342 103 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 RNU6-789P-201ENST00000517105 102 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 MIR3920-201ENST00000581751 86 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 MIR4439-201ENST00000583746 80 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 MIR6755-201ENST00000619993 66 ntBASIC0.26□□□□□ -2.37
SHMT1P34896 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.26□□□□□ -2.37
SHMT1P34896 RNU4-36P-201ENST00000364294 144 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 SNORD45B-201ENST00000364617 72 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 RNU6-1107P-201ENST00000364817 104 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 SNORD113-1-201ENST00000365321 69 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 SNORD115-44-201ENST00000365391 82 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 RNU6-1014P-201ENST00000383940 103 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.25□□□□□ -2.37
SHMT1P34896 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.25□□□□□ -2.37
SHMT1P34896 AC069113.3-201ENST00000521019 150 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 AC073869.9-201ENST00000641610 120 ntBASIC0.25□□□□□ -2.37
SHMT1P34896 SNORA9.1-201ENST00000362412 131 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 RNU6-509P-201ENST00000363519 107 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 RNU6-1056P-201ENST00000383996 107 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 RNU6-269P-201ENST00000391077 97 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 MIR5706-201ENST00000579841 80 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
SHMT1P34896 Y_RNA.374-201ENST00000365606 101 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 RNU6-815P-201ENST00000384080 113 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 MIR4752-201ENST00000579672 72 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 MIR4315-1-201ENST00000636800 73 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 MIR4315-2-201ENST00000640925 73 ntBASIC0.23□□□□□ -2.37
SHMT1P34896 Y_RNA.30-201ENST00000362572 97 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 RNA5SP257-201ENST00000363023 116 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 MIR760-201ENST00000390220 80 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 RNU2-51P-201ENST00000410708 197 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 AC109327.2-201ENST00000448339 378 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 RNU6-86P-201ENST00000606534 107 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 U7.6-201ENST00000610841 64 ntBASIC0.22□□□□□ -2.37
SHMT1P34896 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.21□□□□□ -2.38
SHMT1P34896 RNU6-1244P-201ENST00000363614 108 ntBASIC0.21□□□□□ -2.38
SHMT1P34896 MIR181B2-201ENST00000385004 89 ntBASIC0.21□□□□□ -2.38
SHMT1P34896 Y_RNA.601-201ENST00000410500 113 ntBASIC0.21□□□□□ -2.38
SHMT1P34896 MIR3613-201ENST00000579844 87 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 250.4 ms