Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MIR376B-201ENST00000614515 100 ntBASIC-0.17□□□□□ -2.44
DDX28Q9NUL7 MIR1295B-201ENST00000636144 60 ntBASIC-0.17□□□□□ -2.44
DDX28Q9NUL7 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.17□□□□□ -2.44
DDX28Q9NUL7 RNU6-170P-201ENST00000362832 104 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU6-509P-201ENST00000363519 107 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 SNORA32.1-201ENST00000364514 115 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU4-11P-201ENST00000365287 132 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU6-571P-201ENST00000384128 107 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 SNORD63B-201ENST00000411005 70 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU7-159P-201ENST00000459284 62 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.809-201ENST00000516058 95 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 AC099654.10-201ENST00000640395 161 ntBASIC-0.18□□□□□ -2.44
DDX28Q9NUL7 RNU6-682P-201ENST00000363843 106 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 MIR214-201ENST00000385214 110 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 MT-TG-201ENST00000387429 68 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 AC104692.1-201ENST00000472406 90 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 RNU7-6P-201ENST00000516845 62 ntBASIC-0.19□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 RNU6-1260P-201ENST00000362944 107 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 RNU7-195P-201ENST00000458793 62 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 RNU7-197P-201ENST00000458836 62 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 RNU7-165P-201ENST00000458864 60 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 RNU6-138P-201ENST00000515952 107 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 MIR4677-201ENST00000584153 80 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 AC087741.2-201ENST00000619415 172 ntBASIC-0.2□□□□□ -2.44
DDX28Q9NUL7 SNORD110-201ENST00000408189 75 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 Z95118.1-201ENST00000421372 247 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 RNU7-74P-201ENST00000459104 62 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 MIR3920-201ENST00000581751 86 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 AP001180.6-201ENST00000584918 159 ntBASIC-0.21□□□□□ -2.44
DDX28Q9NUL7 RNU6-151P-201ENST00000364158 107 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 MIR106A-201ENST00000384870 81 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 RNA5SP163-201ENST00000410304 99 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 AC006210.1-201ENST00000424882 111 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 RNU7-13P-201ENST00000516413 62 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 RNU6-388P-201ENST00000517012 105 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 RNU6-389P-201ENST00000517048 105 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 MIR3163-201ENST00000581592 73 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 MIR3925-201ENST00000584674 77 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 AL353621.2-201ENST00000605340 133 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.22□□□□□ -2.44
DDX28Q9NUL7 SNORD115-19-201ENST00000363098 82 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 SNORD115-18-201ENST00000363293 82 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 SNORD115-17-201ENST00000364612 82 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 RNU6-915P-201ENST00000364943 103 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 MIR34C-201ENST00000384831 77 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 MIR759-201ENST00000390224 91 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 RNU6-758P-201ENST00000516292 89 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 RNU6-180P-201ENST00000516697 61 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 AL670379.3-201ENST00000605040 251 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 AC021753.1-201ENST00000635724 168 ntBASIC-0.23□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 RNU6-524P-201ENST00000384270 107 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 SNORD38.2-201ENST00000384470 69 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 SNORA75.1-201ENST00000391130 148 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 RNU6-460P-201ENST00000391158 108 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 MIR513C-201ENST00000401352 84 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 RNU7-106P-201ENST00000459514 67 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 RNU6-521P-201ENST00000516663 105 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 RNU6-850P-201ENST00000516934 103 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 SNORA81.3-201ENST00000517283 198 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 NAMPTP3-201ENST00000569273 224 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 MIR4493-201ENST00000584016 73 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 AC004792.1-201ENST00000614523 137 ntBASIC-0.24□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 RNA5SP484-201ENST00000458857 111 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 IGKV1-22-201ENST00000524313 326 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 MIR4645-201ENST00000583158 77 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.25□□□□□ -2.45
DDX28Q9NUL7 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 RNU6-647P-201ENST00000364243 107 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 RNA5SP368-201ENST00000364298 116 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 MT-TI-201ENST00000387365 69 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 RNA5SP136-201ENST00000410906 107 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 HMGN2P22-201ENST00000427588 175 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 RN7SKP19-201ENST00000516016 252 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 MTND5P40-201ENST00000559945 246 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 AP001340.1-201ENST00000624405 217 ntBASIC-0.26□□□□□ -2.45
DDX28Q9NUL7 SNORA18.1-201ENST00000363418 128 ntBASIC-0.27□□□□□ -2.45
DDX28Q9NUL7 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.27□□□□□ -2.45
DDX28Q9NUL7 RNY4P3-201ENST00000365254 95 ntBASIC-0.27□□□□□ -2.45
DDX28Q9NUL7 snoU13.19-201ENST00000459148 104 ntBASIC-0.27□□□□□ -2.45
DDX28Q9NUL7 RNU6-46P-201ENST00000383860 107 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 MIR604-201ENST00000384880 94 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 RNU6-394P-201ENST00000410735 107 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 AC074198.2-201ENST00000508153 258 ntBASIC-0.28□□□□□ -2.45
DDX28Q9NUL7 SNORA25.13-201ENST00000516395 103 ntBASIC-0.28□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 279.2 ms