Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR635-201ENST00000384830 98 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 RNU6-554P-201ENST00000410466 106 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 SPINT5P-201ENST00000448174 155 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 RNU6-904P-201ENST00000516206 101 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 RNU6-1223P-201ENST00000517124 104 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 AC011195.1-201ENST00000578177 177 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 MIR6857-201ENST00000613267 93 ntBASIC0.84□□□□□ -2.27
PTCHD3Q3KNS1 RNU6-110P-201ENST00000384508 104 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 MIR519A1-201ENST00000385257 85 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 BX276092.1-201ENST00000427368 251 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-850P-201ENST00000516934 103 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 AC138907.6-201ENST00000568401 126 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 AC138869.1-201ENST00000568623 124 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 MIR3613-201ENST00000579844 87 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 AC022709.1-201ENST00000615967 87 ntBASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-170P-201ENST00000362832 104 ntBASIC0.82□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.342-201ENST00000365352 113 ntBASIC0.82□□□□□ -2.28
PTCHD3Q3KNS1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.82□□□□□ -2.28
PTCHD3Q3KNS1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-766P-201ENST00000362478 107 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 SNORA51.5-201ENST00000384126 131 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.567-201ENST00000384736 106 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 AC092628.1-201ENST00000436250 252 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 AL031737.1-201ENST00000450125 223 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 SCARNA23-201ENST00000516060 130 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 SNORA31.14-201ENST00000516728 116 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 CYP3A137P-201ENST00000562436 69 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 uc_338.28-201ENST00000612082 187 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.818-201ENST00000618813 71 ntBASIC0.81□□□□□ -2.28
PTCHD3Q3KNS1 MIR18A-201ENST00000362310 71 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.32-201ENST00000362589 110 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-1163P-201ENST00000364516 107 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-756P-201ENST00000383997 107 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 AC244505.6-201ENST00000452829 130 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.659-201ENST00000515994 113 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-537P-201ENST00000517277 103 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 MIR6515-201ENST00000619843 57 ntBASIC0.8□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-44P-201ENST00000384045 107 ntBASIC0.79□□□□□ -2.28
PTCHD3Q3KNS1 MIR146A-201ENST00000385201 99 ntBASIC0.79□□□□□ -2.28
PTCHD3Q3KNS1 TRAJ51-201ENST00000504127 63 ntBASIC0.79□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-351P-201ENST00000516097 100 ntBASIC0.79□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.95-201ENST00000363079 95 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-1125P-201ENST00000363601 107 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 RNA5SP245-201ENST00000364239 121 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-480P-201ENST00000384332 107 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 SNORD63B-201ENST00000411005 70 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 RNU6-469P-201ENST00000516253 101 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
PTCHD3Q3KNS1 Y_RNA.96-201ENST00000363092 109 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.544-201ENST00000384650 113 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 AC109327.2-201ENST00000448339 378 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 AC097635.1-201ENST00000450678 155 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 RNA5SP436-201ENST00000516020 115 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 MIR3678-201ENST00000578455 94 ntBASIC0.77□□□□□ -2.29
PTCHD3Q3KNS1 MIR7-2-201ENST00000384970 110 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 MIR590-201ENST00000385008 97 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 SNORA19.1-201ENST00000410656 129 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 RNA5SP222-201ENST00000411039 105 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 PSMC1P5-201ENST00000512850 177 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 RNA5SP480-201ENST00000516840 109 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 MIR5000-201ENST00000577717 103 ntBASIC0.76□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.57-201ENST00000362806 113 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-1260P-201ENST00000362944 107 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.93-201ENST00000363066 109 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-1244P-201ENST00000363614 108 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-1254P-201ENST00000391266 104 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-158P-201ENST00000517104 100 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 MIR4639-201ENST00000584938 69 ntBASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.75□□□□□ -2.29
PTCHD3Q3KNS1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.36-201ENST00000362602 112 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 SNORA63.4-201ENST00000362763 126 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.81-201ENST00000362997 102 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-813P-201ENST00000384691 107 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 MIR644A-201ENST00000385262 94 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 RNU7-106P-201ENST00000459514 67 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 MIR4714-201ENST00000580728 77 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 MIR4777-201ENST00000583710 86 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 RNU6-86P-201ENST00000606534 107 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
PTCHD3Q3KNS1 SNORD18A-201ENST00000363753 72 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 MIR598-201ENST00000384868 97 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 MIR516A2-201ENST00000384888 90 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 MIR516A1-201ENST00000385033 90 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 MIR599-201ENST00000385069 95 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 Y_RNA.809-201ENST00000516058 95 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 AC012531.4-201ENST00000616509 177 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 AC091304.10-201ENST00000641554 121 ntBASIC0.73□□□□□ -2.29
PTCHD3Q3KNS1 SNORD36A-201ENST00000362874 73 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 239.3 ms