Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-1313P-201ENST00000362622 102 ntBASIC0.86□□□□□ -2.27
SF3A1Q15459 Y_RNA.273-201ENST00000364703 102 ntBASIC0.86□□□□□ -2.27
SF3A1Q15459 Y_RNA.549-201ENST00000384657 102 ntBASIC0.86□□□□□ -2.27
SF3A1Q15459 MIR635-201ENST00000384830 98 ntBASIC0.86□□□□□ -2.27
SF3A1Q15459 RNU6-1018P-201ENST00000516577 106 ntBASIC0.86□□□□□ -2.27
SF3A1Q15459 Y_RNA.49-201ENST00000362714 112 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 RNA5SP245-201ENST00000364239 121 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 Y_RNA.281-201ENST00000364774 94 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 RNA5SP121-201ENST00000516537 101 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 AC068339.1-201ENST00000526965 141 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 AC138907.6-201ENST00000568401 126 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 AC138869.1-201ENST00000568623 124 ntBASIC0.85□□□□□ -2.27
SF3A1Q15459 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.85□□□□□ -2.27
SF3A1Q15459 Y_RNA.35-201ENST00000362601 101 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 SNORD18A-201ENST00000363753 72 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 Y_RNA.291-201ENST00000364886 113 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 Y_RNA.629-201ENST00000411368 105 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 AC092628.1-201ENST00000436250 252 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 MIR4714-201ENST00000580728 77 ntBASIC0.84□□□□□ -2.27
SF3A1Q15459 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.84□□□□□ -2.28
SF3A1Q15459 SPINT5P-201ENST00000448174 155 ntBASIC0.83□□□□□ -2.28
SF3A1Q15459 RNU4-54P-201ENST00000516428 129 ntBASIC0.83□□□□□ -2.28
SF3A1Q15459 AC018659.1-201ENST00000551083 169 ntBASIC0.83□□□□□ -2.28
SF3A1Q15459 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.83□□□□□ -2.28
SF3A1Q15459 U8.6-201ENST00000364939 135 ntBASIC0.82□□□□□ -2.28
SF3A1Q15459 RNU6-571P-201ENST00000384128 107 ntBASIC0.82□□□□□ -2.28
SF3A1Q15459 SNORD71-201ENST00000411292 86 ntBASIC0.82□□□□□ -2.28
SF3A1Q15459 AL353813.1-201ENST00000440700 253 ntBASIC0.82□□□□□ -2.28
SF3A1Q15459 MIR5009-201ENST00000578736 100 ntBASIC0.81□□□□□ -2.28
SF3A1Q15459 MIR6129-201ENST00000616087 109 ntBASIC0.81□□□□□ -2.28
SF3A1Q15459 RNU6-170P-201ENST00000362832 104 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 RNU6-1290P-201ENST00000362957 109 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 SNORD38.1-201ENST00000363863 68 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 RNA5SP517-201ENST00000364724 117 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 SNRPGP12-201ENST00000449481 213 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 TRAJ51-201ENST00000504127 63 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 MIR4639-201ENST00000584938 69 ntBASIC0.8□□□□□ -2.28
SF3A1Q15459 RNU6-1107P-201ENST00000364817 104 ntBASIC0.79□□□□□ -2.28
SF3A1Q15459 Y_RNA.323-201ENST00000365157 109 ntBASIC0.79□□□□□ -2.28
SF3A1Q15459 RNU6-1201P-201ENST00000384227 107 ntBASIC0.79□□□□□ -2.28
SF3A1Q15459 RNU6-850P-201ENST00000516934 103 ntBASIC0.79□□□□□ -2.28
SF3A1Q15459 MIR6835-201ENST00000621552 64 ntBASIC0.79□□□□□ -2.28
SF3A1Q15459 SNORD115-24-201ENST00000363528 82 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 RNU6-1014P-201ENST00000383940 103 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 RNU6-589P-201ENST00000516485 107 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 MIR4694-201ENST00000578534 80 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 SNORA25.18-201ENST00000607153 114 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 AL442128.1-201ENST00000615151 90 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 MIR6513-201ENST00000621188 64 ntBASIC0.78□□□□□ -2.28
SF3A1Q15459 Y_RNA.377-201ENST00000365644 108 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 SNORA8.2-201ENST00000384372 139 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 SNORD28-201ENST00000384706 75 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 MIR548G-201ENST00000408442 89 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 SNORD63B-201ENST00000411005 70 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 RNU6-1006P-201ENST00000516998 103 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 AC096720.1-201ENST00000604441 183 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 AC244669.1-204ENST00000621564 178 ntBASIC0.77□□□□□ -2.29
SF3A1Q15459 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
SF3A1Q15459 Y_RNA.247-201ENST00000364500 92 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 RNU6-1325P-201ENST00000364905 105 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 MIR193B-201ENST00000384907 83 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 MIR599-201ENST00000385069 95 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 MIR577-201ENST00000385196 96 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 SNORA40.8-201ENST00000411034 126 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 AC097635.1-201ENST00000450678 155 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 AC244505.6-201ENST00000452829 130 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 RNA5SP227-201ENST00000516184 113 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 SCARNA16.5-201ENST00000517114 183 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 RNU6-90P-201ENST00000606352 106 ntBASIC0.76□□□□□ -2.29
SF3A1Q15459 RNY3P2-201ENST00000362918 102 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 MIR508-201ENST00000384857 115 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 RN7SKP12-201ENST00000516275 143 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 RNA5SP268-201ENST00000516828 124 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 Y_RNA.709-201ENST00000516952 92 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 RNA5SP47-201ENST00000517230 109 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.75□□□□□ -2.29
SF3A1Q15459 RNU6-832P-201ENST00000363319 107 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 SNORA36.1-201ENST00000363424 132 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 RNU6-1099P-201ENST00000363533 107 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 Y_RNA.342-201ENST00000365352 113 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 MIR936-201ENST00000401264 98 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 MIR548L-201ENST00000408303 86 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 MIR1273G-201ENST00000577677 100 ntBASIC0.74□□□□□ -2.29
SF3A1Q15459 RNU7-195P-201ENST00000458793 62 ntBASIC0.73□□□□□ -2.29
SF3A1Q15459 Y_RNA.809-201ENST00000516058 95 ntBASIC0.73□□□□□ -2.29
SF3A1Q15459 AC141557.1-201ENST00000540982 400 ntBASIC0.73□□□□□ -2.29
SF3A1Q15459 SNORD114-23-201ENST00000363536 72 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 Y_RNA.221-201ENST00000364248 96 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 MIR518A1-201ENST00000385068 85 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 MIR1302-5-201ENST00000408164 150 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 RNU7-104P-201ENST00000459398 79 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.72□□□□□ -2.29
SF3A1Q15459 AC091304.10-201ENST00000641554 121 ntBASIC0.72□□□□□ -2.29
SF3A1Q15459 Y_RNA.10-201ENST00000362371 110 ntBASIC0.71□□□□□ -2.3
SF3A1Q15459 RNU4-36P-201ENST00000364294 144 ntBASIC0.71□□□□□ -2.3
SF3A1Q15459 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.71□□□□□ -2.3
SF3A1Q15459 Y_RNA.659-201ENST00000515994 113 ntBASIC0.71□□□□□ -2.3
SF3A1Q15459 Y_RNA.57-201ENST00000362806 113 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 221.2 ms