Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.85-201ENST00000363014 111 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 SNORA36.1-201ENST00000363424 132 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 Y_RNA.525-201ENST00000384570 113 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 RNU6-959P-201ENST00000384671 107 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 RNA5SP268-201ENST00000516828 124 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 AC244669.1-204ENST00000621564 178 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 MIR6828-201ENST00000636181 60 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 AL162726.3-218ENST00000636401 95 ntBASIC0.45□□□□□ -2.34
SHMT1P34896 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.45□□□□□ -2.34
SHMT1P34896 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
SHMT1P34896 RNU6-1313P-201ENST00000362622 102 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 SNORD118-201ENST00000363593 134 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 RNU6-81P-201ENST00000365608 104 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 RNU6-816P-201ENST00000390914 107 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 RNU6-1268P-201ENST00000391214 107 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 RNU6-1239P-201ENST00000391310 107 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 AC007012.1-201ENST00000567192 175 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.44□□□□□ -2.34
SHMT1P34896 AC091304.10-201ENST00000641554 121 ntBASIC0.44□□□□□ -2.34
SHMT1P34896 Y_RNA.49-201ENST00000362714 112 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 SNORD115-24-201ENST00000363528 82 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 Y_RNA.309-201ENST00000365046 111 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 SUMO1P3-201ENST00000439961 304 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 SNRPGP12-201ENST00000449481 213 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 TRAJ51-201ENST00000504127 63 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 MTND5P40-201ENST00000559945 246 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 SNORA25.18-201ENST00000607153 114 ntBASIC0.43□□□□□ -2.34
SHMT1P34896 RNU6-170P-201ENST00000362832 104 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 RNU6-1099P-201ENST00000363533 107 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 RNA5SP457-201ENST00000363657 124 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 Y_RNA.258-201ENST00000364613 105 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 MIR519A1-201ENST00000385257 85 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 MIR548A3-201ENST00000385297 97 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 AC008267.6-201ENST00000441664 139 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 AC097635.1-201ENST00000450678 155 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 RNA5SP227-201ENST00000516184 113 ntBASIC0.42□□□□□ -2.34
SHMT1P34896 SNORD38.1-201ENST00000363863 68 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.41□□□□□ -2.34
SHMT1P34896 SNORA68.3-201ENST00000515906 83 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 RNU6-863P-201ENST00000515989 104 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 RNU6-1333P-201ENST00000516162 93 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 SNORD33.1-201ENST00000516213 88 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 AL670379.3-201ENST00000605040 251 ntBASIC0.41□□□□□ -2.34
SHMT1P34896 AC090625.1-201ENST00000357130 210 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 MIR330-201ENST00000362196 94 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 MIRLET7D-201ENST00000362263 87 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 Y_RNA.342-201ENST00000365352 113 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 MIR599-201ENST00000385069 95 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 SNORD63B-201ENST00000411005 70 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 RNU6-850P-201ENST00000516934 103 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 RNU6-90P-201ENST00000606352 106 ntBASIC0.4□□□□□ -2.35
SHMT1P34896 SNORD44.1-201ENST00000363202 61 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 Y_RNA.563-201ENST00000384707 108 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 MIR548A1-201ENST00000385041 97 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 AL603908.1-201ENST00000406098 201 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 RNU6-1006P-201ENST00000516998 103 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 MIR8087-201ENST00000612745 78 ntBASIC0.39□□□□□ -2.35
SHMT1P34896 RNU2-59P-201ENST00000410482 191 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 AL353813.1-201ENST00000440700 253 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 SPINT5P-201ENST00000448174 155 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 Y_RNA.809-201ENST00000516058 95 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 RNA5SP330-201ENST00000517096 96 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 MIR7107-201ENST00000611489 80 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 AL442128.1-201ENST00000615151 90 ntBASIC0.38□□□□□ -2.35
SHMT1P34896 Y_RNA.35-201ENST00000362601 101 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 Y_RNA.353-201ENST00000365440 108 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 RNU6-1201P-201ENST00000384227 107 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 MIR548G-201ENST00000408442 89 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 AC096720.1-201ENST00000604441 183 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 AL035470.1-201ENST00000622571 220 ntBASIC0.37□□□□□ -2.35
SHMT1P34896 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.37□□□□□ -2.35
SHMT1P34896 RNA5SP403-201ENST00000363598 108 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 Y_RNA.221-201ENST00000364248 96 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 Y_RNA.549-201ENST00000384657 102 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 MIR548L-201ENST00000408303 86 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 RNU7-195P-201ENST00000458793 62 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 RNU6-62P-201ENST00000516526 102 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 RNU7-161P-201ENST00000517289 62 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 AC068339.1-201ENST00000526965 141 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 AC067863.3-201ENST00000624172 122 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 AC132825.6-201ENST00000638861 357 ntBASIC0.36□□□□□ -2.35
SHMT1P34896 RNU6-1260P-201ENST00000362944 107 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 Y_RNA.115-201ENST00000363272 98 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 Y_RNA.377-201ENST00000365644 108 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 RNU6-1117P-201ENST00000384525 104 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 RNU7-104P-201ENST00000459398 79 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 RNU7-106P-201ENST00000459514 67 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.35□□□□□ -2.35
SHMT1P34896 MIR3910-1-201ENST00000580936 111 ntBASIC0.35□□□□□ -2.35
SHMT1P34896 Y_RNA.247-201ENST00000364500 92 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 Y_RNA.261-201ENST00000364631 102 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 RNU6-726P-201ENST00000364680 107 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 RNU6-716P-201ENST00000365621 103 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 RNU6-1126P-201ENST00000384002 107 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 MIR4694-201ENST00000578534 80 ntBASIC0.34□□□□□ -2.36
SHMT1P34896 Y_RNA.173-201ENST00000363776 113 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 U8.6-201ENST00000364939 135 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-1327P-201ENST00000365302 105 ntBASIC0.33□□□□□ -2.36
SHMT1P34896 RNU6-880P-201ENST00000384526 107 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 211 ms