Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNY1P7-201ENST00000384743 110 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 MIR181B2-201ENST00000385004 89 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 MIR938-201ENST00000401216 83 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 MIR1827-201ENST00000408549 66 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 RNU6-994P-201ENST00000410507 111 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 BX276092.1-201ENST00000427368 251 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 AC015818.7-201ENST00000428754 109 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 AC087499.7-201ENST00000441958 109 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 RNU7-56P-201ENST00000458744 62 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 MIR4804-201ENST00000581683 73 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.03□□□□□ -2.24
HOXD9P28356 SNORA72.6-201ENST00000384520 129 ntBASIC1.02□□□□□ -2.25
HOXD9P28356 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.02□□□□□ -2.25
HOXD9P28356 RNU6-162P-201ENST00000516228 103 ntBASIC1.02□□□□□ -2.25
HOXD9P28356 AC013244.2-201ENST00000603396 103 ntBASIC1.02□□□□□ -2.25
HOXD9P28356 Y_RNA.56-201ENST00000362798 112 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 Y_RNA.190-201ENST00000363964 101 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
HOXD9P28356 AC067940.1-201ENST00000458411 300 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 AC026421.1-201ENST00000519101 163 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 MIR4679-1-201ENST00000637619 75 ntBASIC1.01□□□□□ -2.25
HOXD9P28356 RNU6-364P-201ENST00000384387 107 ntBASIC1□□□□□ -2.25
HOXD9P28356 Y_RNA.558-201ENST00000384685 113 ntBASIC1□□□□□ -2.25
HOXD9P28356 MIR520E-201ENST00000384867 87 ntBASIC1□□□□□ -2.25
HOXD9P28356 MIR100-201ENST00000385259 80 ntBASIC1□□□□□ -2.25
HOXD9P28356 SNORD100-201ENST00000408573 76 ntBASIC1□□□□□ -2.25
HOXD9P28356 RNU6-977P-201ENST00000516411 103 ntBASIC1□□□□□ -2.25
HOXD9P28356 AL513043.2-201ENST00000573941 143 ntBASIC1□□□□□ -2.25
HOXD9P28356 MIR548H5-201ENST00000580314 60 ntBASIC1□□□□□ -2.25
HOXD9P28356 RNU7-10P-201ENST00000607194 63 ntBASIC1□□□□□ -2.25
HOXD9P28356 MIR373-201ENST00000362273 69 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 MIR200A-201ENST00000384875 90 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 MIR519A1-201ENST00000385257 85 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 FABP5P4-201ENST00000437203 171 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 RNU7-102P-201ENST00000458948 62 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 RNU6-1110P-201ENST00000516462 101 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 AP003327.1-201ENST00000529684 127 ntBASIC0.99□□□□□ -2.25
HOXD9P28356 MIR101-2-201ENST00000362195 79 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 Y_RNA.57-201ENST00000362806 113 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 SNORD114-24-201ENST00000365029 72 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 MIR635-201ENST00000384830 98 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 MIR532-201ENST00000385025 91 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 U7.7-201ENST00000459276 60 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 SNORD124-201ENST00000459577 104 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 AL136317.1-201ENST00000612653 226 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 AC025521.1-201ENST00000621624 286 ntBASIC0.98□□□□□ -2.25
HOXD9P28356 SNORD36A-201ENST00000362874 73 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 Y_RNA.536-201ENST00000384621 113 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 RNU1-119P-201ENST00000391122 165 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 RNU6-1254P-201ENST00000391266 104 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 RPS29P1-201ENST00000465274 159 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 RNU6-448P-201ENST00000517052 107 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 AC008608.1-201ENST00000603910 127 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 RMST_2.1-201ENST00000617263 136 ntBASIC0.97□□□□□ -2.25
HOXD9P28356 MIR516A2-201ENST00000384888 90 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 MIR516A1-201ENST00000385033 90 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 MIR1302-4-201ENST00000408701 150 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 SNORD63B-201ENST00000411005 70 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 RNU7-106P-201ENST00000459514 67 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.96□□□□□ -2.26
HOXD9P28356 TRAJ51-201ENST00000504127 63 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 Y_RNA.697-201ENST00000516776 113 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.96□□□□□ -2.26
HOXD9P28356 SNORD73B-201ENST00000364394 72 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 SNORD116-22-201ENST00000384430 92 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 RNU6-291P-201ENST00000384720 107 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 MIR520F-201ENST00000384824 87 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 MIR518E-201ENST00000385252 88 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 AC092628.1-201ENST00000436250 252 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 MIR4661-201ENST00000582720 75 ntBASIC0.95□□□□□ -2.26
HOXD9P28356 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
HOXD9P28356 Y_RNA.17-201ENST00000362433 111 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 Y_RNA.355-201ENST00000365462 98 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 MIR942-201ENST00000401111 86 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 AL161932.1-201ENST00000437408 146 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 Y_RNA.648-201ENST00000459455 110 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 AC138907.6-201ENST00000568401 126 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 AC138869.1-201ENST00000568623 124 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 AC211469.2-201ENST00000605461 205 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 MIR6857-201ENST00000613267 93 ntBASIC0.94□□□□□ -2.26
HOXD9P28356 RNU6-1260P-201ENST00000362944 107 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 RNU6-1134P-201ENST00000365156 101 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 RNU6-675P-201ENST00000384236 104 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 Y_RNA.508-201ENST00000384502 114 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 SNORD89-201ENST00000390981 114 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 RNU6-243P-201ENST00000391140 107 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 Y_RNA.593-201ENST00000410292 98 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 RNU6ATAC17P-201ENST00000516074 71 ntBASIC0.93□□□□□ -2.26
HOXD9P28356 RNU6-219P-201ENST00000364728 107 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 RNU6-535P-201ENST00000384722 107 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 MIR450A2-201ENST00000385022 100 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 SNORD105-201ENST00000386910 85 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
HOXD9P28356 AC097635.1-201ENST00000450678 155 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 AC025627.3-201ENST00000582078 182 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 MIR4668-201ENST00000582284 70 ntBASIC0.92□□□□□ -2.26
HOXD9P28356 uc_338.16-201ENST00000621804 95 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 216.8 ms