Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 SNORA31.10-201ENST00000516482 106 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 RNA5SP82-201ENST00000516707 92 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 MIR548AR-201ENST00000582191 57 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 MIR3935-201ENST00000583472 104 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 MIR8065-201ENST00000620577 100 ntBASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
COL17A1Q9UMD9 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 RNU6-669P-201ENST00000365575 107 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 Y_RNA.371-201ENST00000365591 113 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 SNORA72.6-201ENST00000384520 129 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 SNORD116-24-201ENST00000384549 92 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 RNU6-75P-201ENST00000515944 104 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 RNA5SP168-201ENST00000516642 112 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 RNU6-850P-201ENST00000516934 103 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 Y_RNA.722-201ENST00000517279 114 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 MIR4709-201ENST00000577272 72 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 AC090897.1-201ENST00000580909 226 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 MIR8055-201ENST00000610739 97 ntBASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
COL17A1Q9UMD9 RNU6-291P-201ENST00000384720 107 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 RNU6-1031P-201ENST00000384773 107 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 MIR136-201ENST00000385207 82 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 MIR524-201ENST00000385242 87 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 SNORA48.1-201ENST00000390879 135 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 U8.16-201ENST00000391279 133 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 AP000753.3-201ENST00000604083 169 ntBASIC2.46□□□□□ -2.02
COL17A1Q9UMD9 MIRLET7F1-201ENST00000362202 87 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 SNORA16.1-201ENST00000364597 132 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 RNY1P13-201ENST00000365030 105 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 HMGN2P39-201ENST00000398005 273 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 HSPE1P9-201ENST00000440046 311 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 RPL23AP6-201ENST00000446637 472 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 AC093850.1-201ENST00000454121 251 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 RNU6-881P-201ENST00000516813 102 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 MIR4500-201ENST00000579472 76 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 RNU6-1067P-201ENST00000384752 107 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 MIR1283-2-201ENST00000408621 87 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 SNRPGP12-201ENST00000449481 213 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 MIR2113-201ENST00000459007 91 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 RN7SL274P-201ENST00000492268 272 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 MIR4764-201ENST00000580680 88 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 MIR4285-201ENST00000581001 85 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 AL109933.3-201ENST00000619095 188 ntBASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL17A1Q9UMD9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 Y_RNA.30-201ENST00000362572 97 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 Y_RNA.178-201ENST00000363832 102 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 SNORD115-22-201ENST00000364456 82 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 SNORD48-201ENST00000364953 64 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 MIR520E-201ENST00000384867 87 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 RPS27P21-201ENST00000486977 252 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 AC133485.1-201ENST00000567176 124 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 SNORD53B-201ENST00000577887 78 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 MIR3675-201ENST00000583661 73 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 MIR4658-201ENST00000584344 65 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 AL353770.2-201ENST00000620024 78 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 AL513423.1-201ENST00000621695 132 ntBASIC2.44□□□□□ -2.02
COL17A1Q9UMD9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 RNU6-1216P-201ENST00000362590 107 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 RNU6-1079P-201ENST00000362861 110 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 SNORD45.1-201ENST00000363181 77 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 RNU6-340P-201ENST00000364005 107 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 MIR548U-201ENST00000390728 81 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 RPS29P1-201ENST00000465274 159 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 MIR4448-201ENST00000584360 86 ntBASIC2.43□□□□□ -2.02
COL17A1Q9UMD9 RNU6-936P-201ENST00000384005 107 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 BX276092.1-201ENST00000427368 251 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 snoU13.27-201ENST00000459278 104 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 RNVU1-2-201ENST00000516326 135 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 RNU6-1223P-201ENST00000517124 104 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 ZNF209P-201ENST00000593450 2304 ntBASIC2.42□□□□□ -2.02
COL17A1Q9UMD9 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 SNORD36A-201ENST00000362874 73 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 Y_RNA.283-201ENST00000364798 112 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 SNORA40.6-201ENST00000391153 128 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 RNA5SP489-201ENST00000410986 109 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 RNA5SP436-201ENST00000516020 115 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 SUB1P4-201ENST00000566062 339 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 MIR4419B-201ENST00000577260 68 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 AC069503.3-201ENST00000618674 145 ntBASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
COL17A1Q9UMD9 SNORD113.1-201ENST00000363280 73 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 RNY1P2-201ENST00000364820 117 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 SNORA6-201ENST00000384033 151 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 MIR516A2-201ENST00000384888 90 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 MIR516A1-201ENST00000385033 90 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 RNU6-808P-201ENST00000391233 108 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 SUMO2P12-201ENST00000405924 140 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 AL691482.2-201ENST00000457453 84 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 RNU4ATAC11P-201ENST00000515939 126 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 AC121758.2-201ENST00000553271 193 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 MIR4529-201ENST00000578110 78 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 SNORD14A-201ENST00000606526 91 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 Z82195.2-201ENST00000612348 18351 ntBASIC2.4□□□□□ -2.02
COL17A1Q9UMD9 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms