Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 Y_RNA.328-201ENST00000365208 113 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 RNU6-291P-201ENST00000384720 107 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 SNORA19-201ENST00000384737 128 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 RNU6-679P-201ENST00000391003 106 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 RNU6-479P-201ENST00000516348 105 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 RNA5SP121-201ENST00000516537 101 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 AC007012.1-201ENST00000567192 175 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 MIR4679-2-201ENST00000578358 77 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 AL670379.3-201ENST00000605040 251 ntBASIC0.61□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.32-201ENST00000362589 110 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU6-363P-201ENST00000362895 105 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 MIR548J-201ENST00000408833 112 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU6-1194P-201ENST00000516208 104 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU4-54P-201ENST00000516428 129 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU6-1006P-201ENST00000516998 103 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU6-789P-201ENST00000517105 102 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 AC018659.1-201ENST00000551083 169 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 uc_338.16-201ENST00000621804 95 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 AL162726.3-218ENST00000636401 95 ntBASIC0.6□□□□□ -2.31
LIMA1Q9UHB6 RNU4-58P-201ENST00000363192 141 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.355-201ENST00000365462 98 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.536-201ENST00000384621 113 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 MIR548A3-201ENST00000385297 97 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 AL606753.1-201ENST00000427435 87 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 DEFB131E-201ENST00000532329 154 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 MIR151B-201ENST00000584249 96 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 AP001362.1-201ENST00000625165 124 ntBASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.59□□□□□ -2.31
LIMA1Q9UHB6 RNU6-1313P-201ENST00000362622 102 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.85-201ENST00000363014 111 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.98-201ENST00000363109 102 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNA5SP245-201ENST00000364239 121 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-865P-201ENST00000364772 107 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-429P-201ENST00000384582 108 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-816P-201ENST00000390914 107 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1154P-201ENST00000391001 104 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1268P-201ENST00000391214 107 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1239P-201ENST00000391310 107 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 SNORA7.5-201ENST00000410672 110 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU2-51P-201ENST00000410708 197 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 AL157398.1-201ENST00000452981 186 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 RNU6-62P-201ENST00000516526 102 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 SNORA31.14-201ENST00000516728 116 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.697-201ENST00000516776 113 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 MIR4714-201ENST00000580728 77 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 U2.22-201ENST00000636441 106 ntBASIC0.58□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.35-201ENST00000362601 101 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 SNORA63.5-201ENST00000363548 123 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.247-201ENST00000364500 92 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.360-201ENST00000365512 102 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1144P-201ENST00000384247 104 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 RPL39P34-201ENST00000477141 156 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 RNU6-313P-201ENST00000516317 112 ntBASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
LIMA1Q9UHB6 RNA5SP499-201ENST00000363982 119 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.281-201ENST00000364774 94 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 RNU6-535P-201ENST00000384722 107 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 RNU6-476P-201ENST00000384726 107 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 BX276092.1-201ENST00000427368 251 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 MIR4500-201ENST00000579472 76 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 uc_338.17-201ENST00000619633 179 ntBASIC0.56□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.155-201ENST00000363632 101 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 RNA5SP117-201ENST00000365294 118 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 RNU6-409P-201ENST00000384114 104 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1201P-201ENST00000384227 107 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 SNORD116-21-201ENST00000384507 92 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 RNU6-880P-201ENST00000384526 107 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 MIR644A-201ENST00000385262 94 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 SNRPGP12-201ENST00000449481 213 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1018P-201ENST00000516577 106 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 MIR5000-201ENST00000577717 103 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 MIR6129-201ENST00000616087 109 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 MIR7111-201ENST00000619751 72 ntBASIC0.55□□□□□ -2.32
LIMA1Q9UHB6 U8.6-201ENST00000364939 135 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.507-201ENST00000384500 99 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 MIR577-201ENST00000385196 96 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 MIR1912-201ENST00000410389 80 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1064P-201ENST00000410626 104 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 RN7SKP12-201ENST00000516275 143 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 RNU6-1223P-201ENST00000517124 104 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 AC068339.1-201ENST00000526965 141 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 MIR3678-201ENST00000578455 94 ntBASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.54□□□□□ -2.32
LIMA1Q9UHB6 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.56-201ENST00000362798 112 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 SNORD18A-201ENST00000363753 72 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.309-201ENST00000365046 111 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 Y_RNA.466-201ENST00000384294 113 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 TRAJ51-201ENST00000504127 63 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 MIR5009-201ENST00000578736 100 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 MIR3613-201ENST00000579844 87 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.53□□□□□ -2.32
LIMA1Q9UHB6 MIR101-2-201ENST00000362195 79 ntBASIC0.52□□□□□ -2.33
LIMA1Q9UHB6 RNU6-834P-201ENST00000362367 110 ntBASIC0.52□□□□□ -2.33
LIMA1Q9UHB6 Y_RNA.174-201ENST00000363781 105 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 194.1 ms