Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC138907.4-201ENST00000570107 226 ntBASIC-1.01□□□□□ -2.57
CHD3Q12873 MIR376A2-201ENST00000636782 80 ntBASIC-1.01□□□□□ -2.57
CHD3Q12873 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 RNU6-690P-201ENST00000365242 106 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC-1.02□□□□□ -2.57
CHD3Q12873 Y_RNA.635-201ENST00000459041 101 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 RNU7-106P-201ENST00000459514 67 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 RNU6-850P-201ENST00000516934 103 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 MIR4760-201ENST00000585040 80 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 Y_RNA.772-201ENST00000606692 102 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 MIR6818-201ENST00000621576 65 ntBASIC-1.02□□□□□ -2.57
CHD3Q12873 SNORD116-1-201ENST00000384335 95 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 Y_RNA.482-201ENST00000384377 111 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 SNORA26.4-201ENST00000391188 123 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 MIR8485-201ENST00000401372 91 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 RNU6-592P-201ENST00000411333 103 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-1.03□□□□□ -2.57
CHD3Q12873 AL731563.1-201ENST00000442202 214 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 RNU7-123P-201ENST00000515911 60 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 SCARNA15-202ENST00000516881 127 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 MIR548AE2-201ENST00000583456 67 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 UBE2WP1-201ENST00000362030 340 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 Y_RNA.9-201ENST00000362354 101 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 Y_RNA.813-201ENST00000364639 102 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC-1.03□□□□□ -2.57
CHD3Q12873 RNU7-2P-201ENST00000516096 62 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 RNU6-358P-201ENST00000516564 75 ntBASIC-1.03□□□□□ -2.57
CHD3Q12873 MIR889-201ENST00000401280 79 ntBASIC-1.04□□□□□ -2.58
CHD3Q12873 Y_RNA.618-201ENST00000410949 107 ntBASIC-1.04□□□□□ -2.58
CHD3Q12873 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC-1.04□□□□□ -2.58
CHD3Q12873 AL353813.1-201ENST00000440700 253 ntBASIC-1.04□□□□□ -2.58
CHD3Q12873 RNU7-4P-201ENST00000516961 62 ntBASIC-1.04□□□□□ -2.58
CHD3Q12873 MIR5690-201ENST00000583739 73 ntBASIC-1.04□□□□□ -2.58
CHD3Q12873 RNU6-818P-201ENST00000364837 108 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 SNORA32-201ENST00000384072 121 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 Y_RNA.542-201ENST00000384641 111 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 MIR526A2-201ENST00000390198 65 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 AC096644.2-201ENST00000429278 159 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 AL445584.3-201ENST00000617173 78 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 AP001362.1-201ENST00000625165 124 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 MIR367-201ENST00000362299 68 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 Y_RNA.328-201ENST00000365208 113 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 RNU6-890P-201ENST00000384121 107 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 RNU6-472P-201ENST00000384299 107 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 SNORD38.2-201ENST00000384470 69 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 Y_RNA.554-201ENST00000384672 102 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 SNORD75.2-201ENST00000408784 58 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 RNU4-14P-201ENST00000410858 122 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 AC021146.9-201ENST00000512503 156 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 RNU6-719P-201ENST00000516671 104 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 AC037487.3-201ENST00000606668 112 ntBASIC-1.05□□□□□ -2.58
CHD3Q12873 Y_RNA.39-201ENST00000362620 98 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU6-1130P-201ENST00000365434 107 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU6-937P-201ENST00000384325 106 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 MIR147A-201ENST00000385079 72 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU7-152P-201ENST00000458982 64 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU6-1299P-201ENST00000516316 100 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 MIR4490-201ENST00000582647 84 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU6-208P-201ENST00000362431 107 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 MIR582-201ENST00000365731 98 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 SNORD101-201ENST00000384027 73 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.06□□□□□ -2.58
CHD3Q12873 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.07□□□□□ -2.58
CHD3Q12873 RNU6-370P-201ENST00000411008 104 ntBASIC-1.07□□□□□ -2.58
CHD3Q12873 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.07□□□□□ -2.58
CHD3Q12873 RNU4-17P-201ENST00000365598 141 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 MIR29B1-201ENST00000385015 81 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 MIR451A-201ENST00000385059 72 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU4-69P-201ENST00000410677 143 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU6-191P-201ENST00000516295 94 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU6-479P-201ENST00000516348 105 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 AP002392.1-201ENST00000537692 208 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 MIR548O2-201ENST00000616090 70 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 AC087741.2-201ENST00000619415 172 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU6-1272P-201ENST00000362776 107 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 SNORA62.4-201ENST00000365504 151 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 RNU6-54P-201ENST00000365563 107 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 Y_RNA.445-201ENST00000384168 102 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 Y_RNA.622-201ENST00000411091 108 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 Y_RNA.661-201ENST00000516003 99 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 AC068339.1-201ENST00000526965 141 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.08□□□□□ -2.58
CHD3Q12873 DLEU2_3.1-201ENST00000620005 73 ntBASIC-1.08□□□□□ -2.58
CHD3Q12873 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.09□□□□□ -2.58
CHD3Q12873 Y_RNA.24-201ENST00000362508 103 ntBASIC-1.09□□□□□ -2.58
CHD3Q12873 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.09□□□□□ -2.58
CHD3Q12873 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.09□□□□□ -2.58
CHD3Q12873 MIR4696-201ENST00000581431 70 ntBASIC-1.09□□□□□ -2.58
CHD3Q12873 AC090617.8-201ENST00000623339 167 ntBASIC-1.09□□□□□ -2.58
CHD3Q12873 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 RNU6-495P-201ENST00000362995 107 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 Y_RNA.150-201ENST00000363562 102 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.1□□□□□ -2.58
CHD3Q12873 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.1□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 2176.8 ms