Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SNORA17.3-201ENST00000391159 129 ntBASIC1.45□□□□□ -2.18
MSX2P35548 SNORA75.3-201ENST00000391231 150 ntBASIC1.45□□□□□ -2.18
MSX2P35548 RNA5SP61-201ENST00000516453 100 ntBASIC1.45□□□□□ -2.18
MSX2P35548 RNA5SP395-201ENST00000516567 118 ntBASIC1.45□□□□□ -2.18
MSX2P35548 RNU6-638P-201ENST00000516582 104 ntBASIC1.45□□□□□ -2.18
MSX2P35548 SNORA25.16-201ENST00000516741 121 ntBASIC1.45□□□□□ -2.18
MSX2P35548 MIR4666B-201ENST00000578142 81 ntBASIC1.45□□□□□ -2.18
MSX2P35548 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.45□□□□□ -2.18
MSX2P35548 MIR8066-201ENST00000617280 78 ntBASIC1.45□□□□□ -2.18
MSX2P35548 RNA5SP190-201ENST00000365222 118 ntBASIC1.44□□□□□ -2.18
MSX2P35548 Y_RNA.363-201ENST00000365529 113 ntBASIC1.44□□□□□ -2.18
MSX2P35548 MIR1323-201ENST00000408090 73 ntBASIC1.44□□□□□ -2.18
MSX2P35548 Y_RNA.611-201ENST00000410682 108 ntBASIC1.44□□□□□ -2.18
MSX2P35548 AC087499.7-201ENST00000441958 109 ntBASIC1.44□□□□□ -2.18
MSX2P35548 SNORD13-201ENST00000459299 104 ntBASIC1.44□□□□□ -2.18
MSX2P35548 RNU6-531P-201ENST00000516694 104 ntBASIC1.44□□□□□ -2.18
MSX2P35548 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.44□□□□□ -2.18
MSX2P35548 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.44□□□□□ -2.18
MSX2P35548 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
MSX2P35548 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.43□□□□□ -2.18
MSX2P35548 RNU1-42P-201ENST00000364033 160 ntBASIC1.43□□□□□ -2.18
MSX2P35548 SNORD93-201ENST00000408813 74 ntBASIC1.43□□□□□ -2.18
MSX2P35548 SNORA31.2-201ENST00000516019 134 ntBASIC1.43□□□□□ -2.18
MSX2P35548 RN7SKP88-201ENST00000516847 250 ntBASIC1.43□□□□□ -2.18
MSX2P35548 AC036111.3-201ENST00000526389 112 ntBASIC1.43□□□□□ -2.18
MSX2P35548 7SK.8-201ENST00000612110 250 ntBASIC1.43□□□□□ -2.18
MSX2P35548 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.43□□□□□ -2.18
MSX2P35548 7SK.11-201ENST00000615477 250 ntBASIC1.43□□□□□ -2.18
MSX2P35548 7SK.13-201ENST00000622040 250 ntBASIC1.43□□□□□ -2.18
MSX2P35548 Y_RNA.226-201ENST00000364337 114 ntBASIC1.42□□□□□ -2.18
MSX2P35548 Y_RNA.426-201ENST00000384068 113 ntBASIC1.42□□□□□ -2.18
MSX2P35548 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.42□□□□□ -2.18
MSX2P35548 MIR1255A-201ENST00000408338 113 ntBASIC1.42□□□□□ -2.18
MSX2P35548 RNA5SP225-201ENST00000410874 135 ntBASIC1.42□□□□□ -2.18
MSX2P35548 RNU7-185P-201ENST00000459215 60 ntBASIC1.42□□□□□ -2.18
MSX2P35548 AL161722.3-201ENST00000605789 2983 ntBASIC1.42□□□□□ -2.18
MSX2P35548 RNU4-58P-201ENST00000363192 141 ntBASIC1.41□□□□□ -2.18
MSX2P35548 SNORD113.3-201ENST00000364630 78 ntBASIC1.41□□□□□ -2.18
MSX2P35548 Y_RNA.330-201ENST00000365230 109 ntBASIC1.41□□□□□ -2.18
MSX2P35548 SNORD26-201ENST00000384147 75 ntBASIC1.41□□□□□ -2.18
MSX2P35548 SNORD83.1-201ENST00000411362 77 ntBASIC1.41□□□□□ -2.18
MSX2P35548 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.41□□□□□ -2.18
MSX2P35548 RNU7-85P-201ENST00000458851 63 ntBASIC1.41□□□□□ -2.18
MSX2P35548 SNORD4B-201ENST00000459083 72 ntBASIC1.41□□□□□ -2.18
MSX2P35548 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.41□□□□□ -2.18
MSX2P35548 snoU13.31-201ENST00000607291 104 ntBASIC1.41□□□□□ -2.18
MSX2P35548 AL512598.1-201ENST00000610158 273 ntBASIC1.41□□□□□ -2.18
MSX2P35548 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
MSX2P35548 AC023934.1-201ENST00000574529 2389 ntBASIC1.41□□□□□ -2.18
MSX2P35548 SNORD36A-201ENST00000362874 73 ntBASIC1.4□□□□□ -2.19
MSX2P35548 MIR1287-201ENST00000408492 90 ntBASIC1.4□□□□□ -2.19
MSX2P35548 RNU6-519P-201ENST00000410590 108 ntBASIC1.4□□□□□ -2.19
MSX2P35548 Y_RNA.648-201ENST00000459455 110 ntBASIC1.4□□□□□ -2.19
MSX2P35548 MIR502-201ENST00000606349 86 ntBASIC1.4□□□□□ -2.19
MSX2P35548 MIR7974-201ENST00000615835 79 ntBASIC1.4□□□□□ -2.19
MSX2P35548 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
MSX2P35548 MIR337-201ENST00000362281 93 ntBASIC1.39□□□□□ -2.19
MSX2P35548 RNU6-403P-201ENST00000363163 104 ntBASIC1.39□□□□□ -2.19
MSX2P35548 Y_RNA.313-201ENST00000365095 103 ntBASIC1.39□□□□□ -2.19
MSX2P35548 RNU6-53P-201ENST00000365367 106 ntBASIC1.39□□□□□ -2.19
MSX2P35548 Y_RNA.437-201ENST00000384113 113 ntBASIC1.39□□□□□ -2.19
MSX2P35548 RNU6-524P-201ENST00000384270 107 ntBASIC1.39□□□□□ -2.19
MSX2P35548 SNORA72.6-201ENST00000384520 129 ntBASIC1.39□□□□□ -2.19
MSX2P35548 MIR516A2-201ENST00000384888 90 ntBASIC1.39□□□□□ -2.19
MSX2P35548 MIR516A1-201ENST00000385033 90 ntBASIC1.39□□□□□ -2.19
MSX2P35548 AC015818.7-201ENST00000428754 109 ntBASIC1.39□□□□□ -2.19
MSX2P35548 RNU6-1194P-201ENST00000516208 104 ntBASIC1.39□□□□□ -2.19
MSX2P35548 BX248123.2-201ENST00000606318 124 ntBASIC1.39□□□□□ -2.19
MSX2P35548 MIR519C-201ENST00000385053 87 ntBASIC1.38□□□□□ -2.19
MSX2P35548 MIR1257-201ENST00000408490 117 ntBASIC1.38□□□□□ -2.19
MSX2P35548 RNU6-955P-201ENST00000410497 104 ntBASIC1.38□□□□□ -2.19
MSX2P35548 Y_RNA.607-201ENST00000410597 98 ntBASIC1.38□□□□□ -2.19
MSX2P35548 RPS29P23-201ENST00000458635 123 ntBASIC1.38□□□□□ -2.19
MSX2P35548 RNU7-21P-201ENST00000459430 62 ntBASIC1.38□□□□□ -2.19
MSX2P35548 RNU7-106P-201ENST00000459514 67 ntBASIC1.38□□□□□ -2.19
MSX2P35548 MIR6082-201ENST00000613604 109 ntBASIC1.38□□□□□ -2.19
MSX2P35548 AC106800.4-201ENST00000614905 153 ntBASIC1.38□□□□□ -2.19
MSX2P35548 Y_RNA.13-201ENST00000362403 112 ntBASIC1.37□□□□□ -2.19
MSX2P35548 RNU6-934P-201ENST00000365154 107 ntBASIC1.37□□□□□ -2.19
MSX2P35548 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
MSX2P35548 RNU6-1254P-201ENST00000391266 104 ntBASIC1.37□□□□□ -2.19
MSX2P35548 SNORD100-201ENST00000408573 76 ntBASIC1.37□□□□□ -2.19
MSX2P35548 RNU4-62P-201ENST00000410125 130 ntBASIC1.37□□□□□ -2.19
MSX2P35548 snoU13.11-201ENST00000459219 104 ntBASIC1.37□□□□□ -2.19
MSX2P35548 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.37□□□□□ -2.19
MSX2P35548 AC013244.2-201ENST00000603396 103 ntBASIC1.37□□□□□ -2.19
MSX2P35548 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.37□□□□□ -2.19
MSX2P35548 MIR125B2-201ENST00000385128 89 ntBASIC1.36□□□□□ -2.19
MSX2P35548 RNU6-279P-201ENST00000391297 101 ntBASIC1.36□□□□□ -2.19
MSX2P35548 SNORD111-201ENST00000408139 94 ntBASIC1.36□□□□□ -2.19
MSX2P35548 RNU6-321P-201ENST00000410912 106 ntBASIC1.36□□□□□ -2.19
MSX2P35548 SNORD63B-201ENST00000411005 70 ntBASIC1.36□□□□□ -2.19
MSX2P35548 AL591704.2-201ENST00000421658 181 ntBASIC1.36□□□□□ -2.19
MSX2P35548 AL354695.1-201ENST00000427935 228 ntBASIC1.36□□□□□ -2.19
MSX2P35548 TRMT112P2-201ENST00000512910 132 ntBASIC1.36□□□□□ -2.19
MSX2P35548 AC023827.1-201ENST00000569247 97 ntBASIC1.36□□□□□ -2.19
MSX2P35548 MIR4771-2-201ENST00000577758 74 ntBASIC1.36□□□□□ -2.19
MSX2P35548 MIR4771-1-201ENST00000582617 74 ntBASIC1.36□□□□□ -2.19
MSX2P35548 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.35□□□□□ -2.19
MSX2P35548 RNU6-369P-201ENST00000362515 102 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 1294.3 ms